Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_I15
         (770 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)      184   4e-47
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)...   181   4e-46
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)...   180   9e-46
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con...    35   0.068
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta...    28   7.9  
At4g37380.1 68417.m05293 pentatricopeptide (PPR) repeat-containi...    28   7.9  
At2g22830.1 68415.m02711 squalene monooxygenase, putative / squa...    28   7.9  

>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 
          Length = 317

 Score =  184 bits (449), Expect = 4e-47
 Identities = 87/160 (54%), Positives = 113/160 (70%)
 Frame = -2

Query: 739 IAPLSVVIPAHNTGLGPEKTSXFQALXIPTKISKGTIEIINDVHILKPGDKVGASEATLL 560
           +AP+ VV+   NTGL P +TS FQ L IPTKI+KGT+EII  V ++K GDKVG+SEA LL
Sbjct: 119 VAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALL 178

Query: 559 NMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIA 380
             L I PFSYGLVV+ VYD+G++F PE+L++  +DL  KF AGV+ + ALSLAI YPT+A
Sbjct: 179 AKLGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVA 238

Query: 379 SAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKF 260
           +APH   N +KN+L               +KEF+KDP+KF
Sbjct: 239 AAPHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTKF 278


>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
           similar to 60S acidic ribosomal protein P0 GI:2088654
           [Arabidopsis thaliana]
          Length = 323

 Score =  181 bits (441), Expect = 4e-46
 Identities = 84/160 (52%), Positives = 112/160 (70%)
 Frame = -2

Query: 739 IAPLSVVIPAHNTGLGPEKTSXFQALXIPTKISKGTIEIINDVHILKPGDKVGASEATLL 560
           +AP+ VV+   NTGL P +TS FQ L IPTKI+KGT+EII  V ++K GDKVG+SEA LL
Sbjct: 118 VAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALL 177

Query: 559 NMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIA 380
             L I PFSYGLVV+ VYD+G++F+PE+LD+  + L  KF +G++ V +L+LA+ YPT+A
Sbjct: 178 AKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLA 237

Query: 379 SAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKF 260
           +APH   N +KN L               +KEF+KDPSKF
Sbjct: 238 AAPHMFINAYKNALAIAVATDYTFPQAEKVKEFLKDPSKF 277


>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
           similar to putative 60S acidic ribosomal protein P0
           GB:P50346 [Glycine max]
          Length = 320

 Score =  180 bits (438), Expect = 9e-46
 Identities = 83/160 (51%), Positives = 112/160 (70%)
 Frame = -2

Query: 739 IAPLSVVIPAHNTGLGPEKTSXFQALXIPTKISKGTIEIINDVHILKPGDKVGASEATLL 560
           +AP+ VV+   NTGL P +TS FQ L IPTKI+KGT+EII  V ++K GDKVG+SEA LL
Sbjct: 118 VAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALL 177

Query: 559 NMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIA 380
             L I PFSYGLVV+ VYD+G++F+PE+LD+  + L  KF +G++ V +L+LA+ YPT+A
Sbjct: 178 AKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLA 237

Query: 379 SAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKF 260
           +APH   N +KN L               +KE++KDPSKF
Sbjct: 238 AAPHMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKF 277


>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
           contains similarity to 60S acidic ribosomal protein
           GI:5815233 from [Homo sapiens]
          Length = 235

 Score = 34.7 bits (76), Expect = 0.068
 Identities = 17/81 (20%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
 Frame = -2

Query: 688 EKTSXFQALXIPTKISKGTIEIINDVHILKPGDKVGASEATLLNML--NISPFSYGLVVK 515
           E     + L +P +++KGT+E++ D  + + G ++    A +L +L   ++ F   L+ +
Sbjct: 149 EMEPLLRKLEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMATFKLNLLCR 208

Query: 514 QVYDSGTIFAPEILDIKPEDL 452
                  ++  ++ ++  EDL
Sbjct: 209 WSPSDFELYREDLSELYREDL 229


>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal
           domain-containing protein similarity to
           TETRATRICOPEPTIDE REPEAT PROTEIN 2 , human,
           SWISSPROT:TTC2_HUMAN; contains Pfam profiles PF00226:
           DnaJ domain, PF00515: TPR Domain
          Length = 1165

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +3

Query: 441 NLARRSSGLMSRI-SGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTS 617
           N+ R  +   S I +G+   PE+Y+ +   PYE  E   + R  +++ P  +P +     
Sbjct: 357 NIGREFAFAESAIPNGSNEAPEAYSPMDISPYEETE---VCREFSADIPPTAPNYLFDAE 413

Query: 618 LMISIVPFEILVG 656
           L+ +    EI  G
Sbjct: 414 LVAATERMEINEG 426


>At4g37380.1 68417.m05293 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 632

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 27/98 (27%), Positives = 42/98 (42%)
 Frame = -2

Query: 634 TIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPED 455
           TIEI N VH  + GD+  +    +  ML         + +++   G  + P    +  +D
Sbjct: 502 TIEIENKVHEFRAGDREHSKSKEIYTMLR-------KISERIKSHG--YVPNTNTVL-QD 551

Query: 454 LRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNL 341
           L    +     V +  LAI Y  I++ P S    FKNL
Sbjct: 552 LEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNL 589


>At2g22830.1 68415.m02711 squalene monooxygenase, putative /
           squalene epoxidase, putative similar to SP|O65404 (SE
           1,1), SP|O65402 (SE 1,2), SP|O65403 (SE 2)
          Length = 585

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -3

Query: 657 SLPRFQRVLLKSSTMYTS*SPVTRLELLKPPFST 556
           +LPRFQ  L +SS +YT+  P +R  L    F+T
Sbjct: 8   NLPRFQSTL-RSSLLYTNHRPSSRFSLSTRRFTT 40


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,641,643
Number of Sequences: 28952
Number of extensions: 257449
Number of successful extensions: 594
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)