Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_I13
         (785 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               138   4e-33
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)                   36   0.028
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.8  
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)                  30   2.4  
SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)           29   4.3  
SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)                 28   9.9  
SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8)                        28   9.9  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  138 bits (335), Expect = 4e-33
 Identities = 60/82 (73%), Positives = 69/82 (84%)
 Frame = -1

Query: 602 DPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRL 423
           DP  DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN K  HSIGLM+WLLAREVLR+
Sbjct: 126 DPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAREVLRM 185

Query: 422 RGVLPRDQRWDVVVDLFFYRDP 357
           RG + R   W+++ DL+FYRDP
Sbjct: 186 RGSISRALPWEIMPDLYFYRDP 207


>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1772

 Score = 36.3 bits (80), Expect = 0.028
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +1

Query: 376  KSTTTSQRWSRGSTPRSLSTSRANNHHIKPIEWEDLVLHGIAMST-NLSGE---SVLHKA 543
            K+TT   RWS+G TP      ++   H   I    L+ HG   ST NL+ E    VL++ 
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNEN 1453

Query: 544  ITGMLTY 564
              G +TY
Sbjct: 1454 ELGTMTY 1460


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 624  PXXXDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHCYP 493
            P   DCI  C+ PS     F C+ +C         T++C +C+P
Sbjct: 879  PSANDCI-TCSDPSNALIGFTCKANCTPGQFKNTATRVCENCHP 921


>SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +1

Query: 364 R*KNKSTTTSQRWSRGSTPRSLSTSRANNHHIKPIEWEDL---VLHGIAMSTNLSGESVL 534
           R  N+  T   ++   STP   +  + N+  ++P EW ++     H   +   L+GES  
Sbjct: 3   RGSNRRPTFKYKFGDSSTPFYSALKKQNDRSMRPWEWHEMKARYSHAQTLINALTGESKY 62

Query: 535 HKAITG 552
              +TG
Sbjct: 63  EFTLTG 68


>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
          Length = 315

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 473 HSIGLMWWLLAREVLRLRGVLP 408
           H  G +WW+L  E LR + VLP
Sbjct: 46  HDDGSVWWVLTSESLRAKAVLP 67


>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 197  SCFWSTPCSRRMVCPGTR*VEHNCRRTSRRHRSA 96
            +C W+ P   R+  PG R   H    T+R H +A
Sbjct: 904  TCSWALPAHYRVHVPGQRSASHEAFDTTRPHENA 937


>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
          Length = 432

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -1

Query: 602 DPAQDHQPITEASYVNIPVIALCNTDSPLRF 510
           DP  +HQPIT+ +   I ++A   TD+PL+F
Sbjct: 120 DPDVEHQPITDRAEACICLVA---TDAPLKF 147


>SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)
          Length = 1702

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = -1

Query: 527 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQR 396
           +SPL +  I +PCNT +S+     W+LLA  +  ++ VL  D R
Sbjct: 495 ESPLSYDLILVPCNTPNSNH----WFLLA-VLPHMKAVLLLDSR 533


>SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8)
          Length = 594

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = +1

Query: 397 RWSRGSTPRSLSTSRA---NNHHIKPIEWE-DLVLHGIAMSTNLSGESVLH 537
           RWS  +TPR   TS     N  H+ P+  + D+  H  A + +L   S ++
Sbjct: 62  RWSHATTPRGGGTSSVLALNLAHVPPVSGDYDVAFHKHAAAVHLEDWSTIN 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,798,644
Number of Sequences: 59808
Number of extensions: 382189
Number of successful extensions: 839
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)