Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_I08
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        25   0.79 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   5.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.7  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = -3

Query: 395 HRSRWKLHTRPSRPNGKPSTSPKARHYGSS*S-INGAFRHHKHRSPSSSNPSLATKGSTS 219
           H S     + P       STSP AR   S    ++ A  HH H+   +   + A  G+TS
Sbjct: 59  HNSPSPTGSSPQHSGSSASTSPAARTTSSMYPYVSAAAAHHHHQQQQA--VAAAAFGATS 116

Query: 218 EL 213
            +
Sbjct: 117 SM 118


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 135 AESTTGSETRPTEKIRRETQ 194
           A  TTG+ T PT ++R+  Q
Sbjct: 252 AAMTTGTTTIPTRRLRKRRQ 271



 Score = 21.8 bits (44), Expect = 7.3
 Identities = 12/53 (22%), Positives = 25/53 (47%)
 Frame = -3

Query: 362  SRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHR 204
            S  NG+P+++  A+ + ++ S  G           +S+P+ +  G T  +  R
Sbjct: 896  SSKNGEPTSAAFAQGFATAASSPGLLERASPAFSGTSSPTNSLVGKTVAVNFR 948


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 368 GYVISSGYDERVLMSCRLLKMAQRC 442
           GY  +S +D +V+ + ++LKM   C
Sbjct: 210 GYTNNSKWDFKVIKATKVLKMYACC 234


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 326 LWATSTVYHSVYWVGYVISSGYDERVLMSC 415
           +W    V+ +V W+G+ I+SG +  V+ +C
Sbjct: 365 IWQEKIVFAAVTWLGW-INSGMNP-VIYAC 392


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +2

Query: 374 VISSGYDERVLMSCRLLKMAQRCRL*ILTKRVELQVVVEIHIPKEPRR 517
           ++ +G   R+L   +LL + +  RL  L + V     V I + ++P R
Sbjct: 198 ILHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQWEEVYIPLYQQPER 245


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,124
Number of Sequences: 438
Number of extensions: 3996
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)