Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_I08
         (778 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp...    30   2.0  
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp...    30   2.0  
At2g38570.1 68415.m04738 expressed protein ; expression supporte...    29   3.4  
At3g09710.1 68416.m01150 calmodulin-binding family protein low s...    28   7.9  
At2g25605.1 68415.m03067 expressed protein                             28   7.9  

>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 844

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
 Frame = -3

Query: 404 EPSHRSRWKLHTRPSRPNGKPSTS-PKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKG 228
           +  H    K H   +R + K   S  K +H  SS     +   H+HR   SS+       
Sbjct: 651 DKKHSCSRKRHKHKTRYSSKDRHSRDKHKHESSSDDEYHSRSRHRHRHSKSSDRHELYDS 710

Query: 227 STSELTHRHSPLSFSPDL 174
           S +E  HRH     S D+
Sbjct: 711 SDNEGEHRHRSSKHSKDV 728


>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 843

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
 Frame = -3

Query: 404 EPSHRSRWKLHTRPSRPNGKPSTS-PKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKG 228
           +  H    K H   +R + K   S  K +H  SS     +   H+HR   SS+       
Sbjct: 651 DKKHSCSRKRHKHKTRYSSKDRHSRDKHKHESSSDDEYHSRSRHRHRHSKSSDRHELYDS 710

Query: 227 STSELTHRHSPLSFSPDL 174
           S +E  HRH     S D+
Sbjct: 711 SDNEGEHRHRSSKHSKDV 728


>At2g38570.1 68415.m04738 expressed protein ; expression supported
           by MPSS
          Length = 302

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 202 CLWVSSLVEPFVASDGF-DEDGDRCLWCLKAPLMDQED 312
           C W+ S   PF+    F ++  D  + CL + L ++ED
Sbjct: 41  CFWIDSKNSPFLGQFSFIEKPRDNFICCLSSSLSNEED 78


>At3g09710.1 68416.m01150 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 454

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
 Frame = -3

Query: 422 EGGTT*EPSHRSRWKLHTRPSRPNGKPSTS-------PKARHYGSS*SINGAFRHHKHRS 264
           +GG T + S+R++    T+P+ P+   + +       P      S  S + A    ++R 
Sbjct: 298 QGGETAKSSNRNKLNSSTKPNTPSASSTATRNPRKKRPIPSSIKSKSSDDEAKSSERNRR 357

Query: 263 PSSSNPSLATKGSTSELTHRHS 198
           PS + PS++   + S  T R S
Sbjct: 358 PSIARPSVSDDETLSSSTARRS 379


>At2g25605.1 68415.m03067 expressed protein
          Length = 200

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -1

Query: 445 SASLRHFEKAARHENPLIVAAGNYIPD--PVDRMVNRRRRP 329
           SA+++HF    R    L+ A+ + +PD    D + +RR+RP
Sbjct: 16  SANVKHFNGYGRLNRNLVRASSSDVPDFLSADWLESRRKRP 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,948,335
Number of Sequences: 28952
Number of extensions: 328538
Number of successful extensions: 880
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)