Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_I07
         (830 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3HI19 Cluster: Putative uncharacterized protein; n=2; ...    34   5.0  
UniRef50_Q0INV4 Cluster: Os12g0288300 protein; n=1; Oryza sativa...    34   5.0  

>UniRef50_A3HI19 Cluster: Putative uncharacterized protein; n=2;
           Pseudomonas putida|Rep: Putative uncharacterized protein
           - Pseudomonas putida (strain GB-1)
          Length = 591

 Score = 33.9 bits (74), Expect = 5.0
 Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = +1

Query: 508 ASGGLVAGGQGSRGXAEAGAPRPNTGAGPPXAXC-RXRXPGKDIWNFAPP 654
           AS G   GG+G  G A    P P TG+    A C R R P        PP
Sbjct: 507 ASAGSAPGGRGCAGPAAVARPGPGTGSANARAACGRRRYPAAGGRRSVPP 556


>UniRef50_Q0INV4 Cluster: Os12g0288300 protein; n=1; Oryza sativa
           (japonica cultivar-group)|Rep: Os12g0288300 protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 142

 Score = 33.9 bits (74), Expect = 5.0
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +1

Query: 499 ETAASGGLVAGGQGSRGXAEAGAPRPNTGAG 591
           + A SG  V GG+ +RG AEAG  R  +GAG
Sbjct: 110 KAAESGARVGGGRCTRGGAEAGGGRRGSGAG 140


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 415,401,176
Number of Sequences: 1657284
Number of extensions: 5536737
Number of successful extensions: 18502
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18408
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 72143915536
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)