Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_I07
         (830 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical pr...    29   5.4  
U14635-8|AAK84492.1|  307|Caenorhabditis elegans Collagen protei...    28   9.4  
L15418-1|AAA17445.1|  307|Caenorhabditis elegans col-36 collagen...    28   9.4  
AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical ...    28   9.4  

>Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical
           protein C56A3.1 protein.
          Length = 393

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +1

Query: 514 GGLVAGGQGSRGXAEAGAPRPNTGAGPPXA 603
           GG  +GG G    A    P P+ G  PP A
Sbjct: 133 GGYASGGSGGFASAPVSLPAPSYGGPPPPA 162


>U14635-8|AAK84492.1|  307|Caenorhabditis elegans Collagen protein
           36 protein.
          Length = 307

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +1

Query: 529 GGQGSRGXAEAGAPRPNTGAGPPXAXCRXRXPGKD 633
           GGQG  G  +AG P P  G GPP        PG +
Sbjct: 260 GGQGPPG--DAGGPGPVGGQGPPGPQGPQGPPGDE 292


>L15418-1|AAA17445.1|  307|Caenorhabditis elegans col-36 collagen
           protein.
          Length = 307

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +1

Query: 529 GGQGSRGXAEAGAPRPNTGAGPPXAXCRXRXPGKD 633
           GGQG  G  +AG P P  G GPP        PG +
Sbjct: 260 GGQGPPG--DAGGPGPVGGQGPPGPQGPQGPPGDE 292


>AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical
           protein Y80D3A.8 protein.
          Length = 1293

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 511 SGGLVAGGQGSRGXAEAGAPRPNTGAGP 594
           SGG+  GG G+     +G P  NTG GP
Sbjct: 820 SGGVNTGGTGN--GTSSGGPSGNTGTGP 845


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,182,302
Number of Sequences: 27780
Number of extensions: 127650
Number of successful extensions: 455
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)