Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_I07
         (830 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06130.1 68416.m00704 heavy-metal-associated domain-containin...    29   2.9  
At5g33390.1 68418.m03985 glycine-rich protein similar to nuclear...    29   5.0  

>At3g06130.1 68416.m00704 heavy-metal-associated domain-containing
           protein contains Pfam heavy metal associated domain
           PF00403
          Length = 473

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 505 AASGGLVAGGQGSRGXAEAGAPRPNTGAG 591
           AA GG   GG+G+ G A+ G    N G G
Sbjct: 262 AAGGGGAGGGKGAGGGAKGGPGNQNQGGG 290


>At5g33390.1 68418.m03985 glycine-rich protein similar to nuclear
           antigen EBNA-1 (GI:3342234) {Cercopithecine herpesvirus
           15}
          Length = 118

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 505 AASGGLVAGGQGSRGXAEAGAPRPNTGAG 591
           + SGG V+GG GS G    G+    +G+G
Sbjct: 13  SGSGGSVSGGSGSGGSGSGGSGSGGSGSG 41


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,898,055
Number of Sequences: 28952
Number of extensions: 122108
Number of successful extensions: 325
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)