Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_I06
         (833 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0581 - 30386018-30386440                                         29   4.6  
07_01_0602 + 4485753-4486751                                           28   8.0  
03_06_0152 + 32021044-32021296,32021408-32021712,32022299-32022829     28   8.0  

>01_06_0581 - 30386018-30386440
          Length = 140

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 270 SGVRSQVLERLEMRLRSGGGGARRQ 344
           SG+  +V +R+E   R GGGG RR+
Sbjct: 31  SGIEVKVRKRVEKEARMGGGGRRRR 55


>07_01_0602 + 4485753-4486751
          Length = 332

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -3

Query: 705 GMXTNLSSGGCRARDPWARW--KLAWQCSRCLSGDAPRH-TRWRP 580
           G+  NLSS      D  ++   K+     RCL+GD PRH  RW P
Sbjct: 40  GVQLNLSSAFHPQSDGQSKVTNKIIAMYLRCLTGDRPRHWLRWLP 84


>03_06_0152 + 32021044-32021296,32021408-32021712,32022299-32022829
          Length = 362

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
 Frame = +2

Query: 548 QKQEHHXEHGAGRQRVCRGA---SPERHLEHCHASFHLAHGSLALXPPLDK 691
           Q+Q+H   H       C G    +   H  H H   H   GSL + PP  K
Sbjct: 253 QQQQHGGRHQMMSTMSCNGGYFFNDGIHHSHSHHKLHSQWGSLQMAPPEPK 303


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,649,317
Number of Sequences: 37544
Number of extensions: 288400
Number of successful extensions: 897
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)