Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_I04
         (793 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                139   3e-33
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           38   0.007
SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)             32   0.46 
SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068)             32   0.46 
SB_56291| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.61 
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              31   0.81 
SB_14508| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_11886| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_46033| Best HMM Match : Phage_integrase (HMM E-Value=0.022)         29   3.3  
SB_2270| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  
SB_42662| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_39482| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)                 29   5.7  
SB_44865| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)       28   7.5  
SB_59169| Best HMM Match : Sre (HMM E-Value=3.3)                       28   10.0 

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  139 bits (336), Expect = 3e-33
 Identities = 64/76 (84%), Positives = 70/76 (92%)
 Frame = -1

Query: 418 PCVFPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVP 239
           P   PLQDVYKIGGIGTVPVGRVETGVLKPGT+V F+P+NITTEVKSVEMHHE+L EA+P
Sbjct: 104 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTVVTFSPSNITTEVKSVEMHHESLAEALP 163

Query: 238 GDNVGFNVKNVSVQGI 191
           GDNVGFNVKNVSV+ I
Sbjct: 164 GDNVGFNVKNVSVKDI 179



 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 55/154 (35%), Positives = 75/154 (48%), Gaps = 8/154 (5%)
 Frame = -2

Query: 528 PWFKGWQVER------KEGKADGKCLIEALDAILPPARPTDKPPASSPCKTYTK--SVVL 373
           PWFK W +ER      KE  A G  L E LD+ILPP+RP+  P    P +   K   +  
Sbjct: 62  PWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLP-LRLPLQDVYKIGGIGT 120

Query: 372 VPCPSAELKLVC*NQVXXXXXXXXXXXXXXXLWRCTTKLSKKLYLETM*VST*RTCPXKE 193
           VP    E  ++    V                    + L++ L  + +  +  +    K+
Sbjct: 121 VPVGRVETGVLKPGTVVTFSPSNITTEVKSVEMHHES-LAEALPGDNVGFNV-KNVSVKD 178

Query: 192 LRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQI 91
           ++RG VAGD KNNPPK    FTAQVIV+NHPG+I
Sbjct: 179 IKRGNVAGDFKNNPPKPCKSFTAQVIVMNHPGEI 212



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = -3

Query: 83  GYTPVLDCHTAHIACKF 33
           GY+PVLDCHTAHIACKF
Sbjct: 215 GYSPVLDCHTAHIACKF 231


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 15/40 (37%), Positives = 27/40 (67%)
 Frame = -3

Query: 719 QQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIWLQP 600
           + L++ VNKMD     ++E R+EEIK +++ ++KK+   P
Sbjct: 283 KHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322



 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -2

Query: 792 GEFEAGIXKXGQTREHA 742
           GEFE G  + GQTREHA
Sbjct: 258 GEFETGFERGGQTREHA 274


>SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)
          Length = 177

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
 Frame = -1

Query: 424 QAPCVFPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANI----TTEVKSVEMHHEA 257
           + P  F + D Y + G+GTV  G    G+++    ++  P  +       ++S+      
Sbjct: 102 EEPSEFQIDDTYSVPGVGTVISGTCMKGIIRLNDTLLLGPDPLGQFQPVAIRSIHRKRMP 161

Query: 256 LQEAVPGDNVGFNVK 212
           ++E   G    F++K
Sbjct: 162 VKEVRGGQTASFSLK 176


>SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068)
          Length = 173

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = -1

Query: 412 VFPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGD 233
           +F +   + I G GT+  G + +G +     V      +T +VKS++M  + + +A  GD
Sbjct: 113 LFAVDHCFSIRGQGTIMTGTILSGSVCVNDTVEIPSLKVTKKVKSMQMFKKPVDKASQGD 172


>SB_56291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 379 HRFCIRLAGGRRRGLVSGAGRWQDGIESFNEAF 477
           HRF  RL G R+RG + G  +W   ++   ++F
Sbjct: 59  HRFLRRLKGSRKRGFIHGLEKWPRVMDEHGKSF 91


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 13/17 (76%), Positives = 13/17 (76%)
 Frame = -2

Query: 792 GEFEAGIXKXGQTREHA 742
           GEFEAG    GQTREHA
Sbjct: 49  GEFEAGFESGGQTREHA 65


>SB_14508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1392

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/71 (22%), Positives = 30/71 (42%)
 Frame = +3

Query: 219  LKPTLSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIPPILYTS 398
            L+P       S   SW  ++    V+ + G     +  F TP+ T    +  +  +++  
Sbjct: 896  LEPLTEKTDLSASRSW--ASGFIKVIQVLGKYGGKLNKFTTPIGTGAAVSTSVANLMHGC 953

Query: 399  CRGKTQGACQW 431
            C+G T   CQ+
Sbjct: 954  CKGSTDTECQY 964


>SB_11886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 87

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 650 EIKKEVSSYIKKIWLQPSCCRFRAHFWMAR 561
           E+  E    I +IWL+  C  F A  W AR
Sbjct: 17  ELDSECRQIISEIWLRDDCVTFPAPLWRAR 46


>SB_46033| Best HMM Match : Phage_integrase (HMM E-Value=0.022)
          Length = 645

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 368 GTNTTDFVYVLQGEDAGGLSVGRAGGRMASRA 463
           GT +    Y +QG   GG    R G RMASR+
Sbjct: 246 GTESDSAFYCIQGAVHGGRGRARVGSRMASRS 277


>SB_2270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 498 KEGKADGKCLIEALDAILPPARPTDKPPASSPCKTYTKSVVLVPCP 361
           +E K  GK   +  DA L        PP+SSP   + +S + +P P
Sbjct: 74  QEAKESGKGRSKETDAQLRTPYGLPSPPSSSPSTPFARSKLALPTP 119


>SB_42662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1054

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 371  TNTTDFVYV-LQGEDAGGLSVGRAGGRMASRASMRH 475
            TN T +  V +QG D  G   G AGGR+A+    RH
Sbjct: 967  TNFTGYGEVNVQGGDGVGEGSGGAGGRIAAHVHFRH 1002


>SB_39482| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 498 KEGKADGKCLIEALDAILPPARPTDKPPASSPCKTYTKSVVLVPCP 361
           +E K  GK   +  DA L        PP+SSP   + +S + +P P
Sbjct: 74  QEAKDSGKGRSKETDAQLRTPYGLPSPPSSSPSTPFARSKLALPTP 119


>SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)
          Length = 665

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 228 TLSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFNT-PVSTLPTGTVPIP 380
           TLSPGT +   +        S   +A  +TT+ P   T PV+TLP  +   P
Sbjct: 32  TLSPGTTAAPETTVAPETTVSPETIAEPETTVAPETTTAPVTTLPPDSTMAP 83


>SB_44865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 498 KEGKADGKCLIEALDAILPPARPTDKPPASSPCKTYTKSVVLVPCP 361
           +E K  GK   +  DA L        PP+SSP   + +S + +P P
Sbjct: 74  QEAKESGKGGSKETDAQLRTPYGLPSPPSSSPSTPFARSKLALPTP 119


>SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)
          Length = 1064

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +2

Query: 224 TYIVSRYSFLESFVVHLHRLDFSSDVGGGKDNNGTWFQHTSFNSADGHGTNTTDFVY 394
           T ++SRYS++E  + H +     S        + TW Q   F++   H +N   + Y
Sbjct: 106 TSLISRYSYIEKLMTHHYTYRHISGGDPLHIPDLTWEQLKKFHATHYHPSNARFYTY 162


>SB_59169| Best HMM Match : Sre (HMM E-Value=3.3)
          Length = 447

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 273 STDLTSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIPPILYTS 398
           +TD+TS+ M+    TT +      ++T  T  + I  I+ T+
Sbjct: 234 TTDITSITMIITTSTTDITSITMIITTTTTDDISITMIIITT 275


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,761,179
Number of Sequences: 59808
Number of extensions: 654870
Number of successful extensions: 2281
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2277
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)