Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_I03
(757 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 173 5e-42
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 170 3e-41
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 144 2e-33
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 131 2e-29
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 129 8e-29
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 98 2e-19
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 94 4e-18
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 87 4e-16
UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S riboso... 86 8e-16
UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep: ... 77 6e-13
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 65 2e-09
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 62 1e-08
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 62 1e-08
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 59 1e-07
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 58 2e-07
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 57 4e-07
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 55 2e-06
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 54 4e-06
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 53 7e-06
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 53 9e-06
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 52 1e-05
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 47 6e-04
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 46 0.001
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 39 0.15
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 37 0.47
UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-... 36 1.4
UniRef50_Q2BFU2 Cluster: RTX toxins and related Ca2+-binding pro... 35 2.5
UniRef50_Q8TB36 Cluster: Ganglioside-induced differentiation-ass... 34 3.3
UniRef50_A6SJW6 Cluster: Translation initiation factor eIF3; n=2... 34 4.4
UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1; ... 33 5.8
UniRef50_Q7Q3S5 Cluster: ENSANGP00000012392; n=2; Culicidae|Rep:... 33 7.6
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 173 bits (420), Expect = 5e-42
Identities = 74/105 (70%), Positives = 90/105 (85%)
Frame = -3
Query: 587 RSYPVRHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGK 408
+ P + KGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE+NKKI+RIG+G H +DGK
Sbjct: 238 KKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHMEDGK 297
Query: 407 VIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 273
++KNNAST YD++ KSITP+GGFPHYGEVNNDFVM +G + GT K
Sbjct: 298 LVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKK 342
Score = 91.9 bits (218), Expect = 2e-17
Identities = 44/66 (66%), Positives = 49/66 (74%)
Frame = -1
Query: 298 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 119
KGC G KKR+ITLRKSL VH R A+E I LKFIDT+SKFGHGRFQT +K AFMG K
Sbjct: 334 KGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393
Query: 118 KDRIRE 101
K +E
Sbjct: 394 KHLEKE 399
Score = 54.8 bits (126), Expect = 2e-06
Identities = 28/64 (43%), Positives = 36/64 (56%)
Frame = -2
Query: 750 LTGVPXXXKVKWAREHSGEXYPCRFCVCPKMK*LTALVSPKGKGYKGVTSRWHTKKLPRK 571
L G KV WA+ + P V + + + + KG+G KGVTSRWHTKKLPRK
Sbjct: 185 LNGGTVAEKVAWAQARLEKQVPVH-SVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRK 243
Query: 570 TXQG 559
T +G
Sbjct: 244 THKG 247
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 170 bits (414), Expect = 3e-41
Identities = 76/105 (72%), Positives = 90/105 (85%)
Frame = -3
Query: 587 RSYPVRHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGK 408
+ P + +GLRKVACIGAWHP+RV+F+VARAGQKGYHHRTE+NKKIY+IGQG KDGK
Sbjct: 238 KKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGK 297
Query: 407 VIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 273
+IKNNAST+YDLS+KSI P+GGF HYGEV NDFVM +G + GT K
Sbjct: 298 LIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKK 342
Score = 107 bits (258), Expect = 2e-22
Identities = 51/70 (72%), Positives = 58/70 (82%)
Frame = -1
Query: 298 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 119
KGC +G KKR++TLRKSL V TKR ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LK
Sbjct: 334 KGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393
Query: 118 KDRIREEAAA 89
KDRI +E A
Sbjct: 394 KDRIAKEEGA 403
Score = 58.0 bits (134), Expect = 2e-07
Identities = 29/56 (51%), Positives = 36/56 (64%)
Frame = -2
Query: 726 KVKWAREHSGEXYPCRFCVCPKMK*LTALVSPKGKGYKGVTSRWHTKKLPRKTXQG 559
K+ WARE + P V + + + + KGKGYKGVTSRWHTKKLPRKT +G
Sbjct: 193 KLDWARERLEQQVPVNQ-VFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRG 247
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 144 bits (349), Expect = 2e-33
Identities = 65/102 (63%), Positives = 81/102 (79%)
Frame = -3
Query: 587 RSYPVRHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGK 408
+ P + KGLRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG+ ++G
Sbjct: 190 KKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEG- 248
Query: 407 VIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 282
KNN STE+DL++K+ITPMGGFP YG VN D++M +G + G
Sbjct: 249 --KNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLG 288
Score = 97.1 bits (231), Expect = 4e-19
Identities = 47/69 (68%), Positives = 54/69 (78%)
Frame = -1
Query: 298 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 119
+G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A+K AFMG LK
Sbjct: 283 RGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 342
Query: 118 KDRIREEAA 92
+D + E A
Sbjct: 343 RDFLAEAEA 351
Score = 48.8 bits (111), Expect = 1e-04
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = -2
Query: 630 KGKGYKGVTSRWHTKKLPRKTXQG 559
+G G+KGVTSRWHTKKLPRKT +G
Sbjct: 176 RGHGFKGVTSRWHTKKLPRKTHKG 199
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 131 bits (317), Expect = 2e-29
Identities = 62/102 (60%), Positives = 77/102 (75%)
Frame = -3
Query: 599 VGTQRSYPVRHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 420
V QR+ P R +G K+ C+GAWHP+RV+F+VA+ GQKGYHH + NKKI +IGQG
Sbjct: 214 VDIQRNCPERPIEGCPKL-CVGAWHPARVTFSVAQVGQKGYHHNGD-NKKICKIGQGYLI 271
Query: 419 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQG 294
KDGK+IKNNA TEY LS+KSI +GGF HYGEV NDF+ +G
Sbjct: 272 KDGKLIKNNAPTEYHLSDKSINLLGGFVHYGEVTNDFIRLKG 313
Score = 59.7 bits (138), Expect = 8e-08
Identities = 34/70 (48%), Positives = 43/70 (61%)
Frame = -1
Query: 298 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 119
KGC + KK + T+ K L V T + AL+KI+ K DT+ K GHG FQT K AF+G LK
Sbjct: 312 KGCAVRTKKHL-TICKYLLVQTIQWALKKIDPKLNDTTYKVGHGCFQTTEGKRAFIGPLK 370
Query: 118 KDRIREEAAA 89
K+ EE A
Sbjct: 371 KECTAEEEGA 380
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 129 bits (311), Expect = 8e-29
Identities = 59/99 (59%), Positives = 74/99 (74%)
Frame = -3
Query: 578 PVRHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 399
P + +GLRKVACIGAWHPSRV +TVARAGQ GYHHRT +NKKIY++G+ + +
Sbjct: 295 PRKTHRGLRKVACIGAWHPSRVMYTVARAGQHGYHHRTHLNKKIYQLGRAVSME-----P 349
Query: 398 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 282
N A+T YDL+ K+ITPMGGF YG V ND+VM +G + G
Sbjct: 350 NQATTAYDLTAKTITPMGGFVGYGTVRNDYVMLKGSVAG 388
Score = 86.6 bits (205), Expect = 6e-16
Identities = 40/67 (59%), Positives = 48/67 (71%)
Frame = -1
Query: 298 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 119
KG GP++R+ITLR+ + T R EKI LKFIDTSSK GHGRFQT +K+ + G LK
Sbjct: 383 KGSVAGPRRRVITLRRPMAPQTSRKLTEKITLKFIDTSSKIGHGRFQTKKEKSQWYGPLK 442
Query: 118 KDRIREE 98
KDRIR E
Sbjct: 443 KDRIRRE 449
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 98.3 bits (234), Expect = 2e-19
Identities = 49/102 (48%), Positives = 69/102 (67%)
Frame = -3
Query: 578 PVRHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 399
P + +GLRKVACIG W PSRV++T++RAGQKGYH RT NKKIY+IG +++
Sbjct: 223 PRKTHRGLRKVACIGPWTPSRVAWTISRAGQKGYHKRTLFNKKIYKIGS---EENFSYYS 279
Query: 398 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 273
N+ S D KS+ MGGF +G +NND+++ +G + G+ K
Sbjct: 280 NSLS---DSIVKSVNCMGGFKKFGFINNDYLIIKGSMTGSSK 318
Score = 55.2 bits (127), Expect = 2e-06
Identities = 27/56 (48%), Positives = 36/56 (64%)
Frame = -1
Query: 298 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFM 131
KG G KR I LRK+++ EKI LK++DTSSK GHGR+++ ADK + M
Sbjct: 310 KGSMTGSSKRPILLRKNIKNKISSVITEKIILKYVDTSSKRGHGRYESSADKFSKM 365
Score = 36.3 bits (80), Expect = 0.82
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = -2
Query: 651 LTALVSPKGKGYKGVTSRWHTKKLPRKTXQG 559
+ A+ KG G KGV SRW +LPRKT +G
Sbjct: 199 IDAIGITKGHGTKGVVSRWGITRLPRKTHRG 229
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 93.9 bits (223), Expect = 4e-18
Identities = 49/97 (50%), Positives = 64/97 (65%)
Frame = -3
Query: 563 KGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNAST 384
KG RKV IG WHP+RV +TV AGQ G+HHRTE+NK++ IG+ +GK +K + +T
Sbjct: 248 KGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE-----NGK-LKLDENT 301
Query: 383 EYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 273
E + ITP GGFPHYG V +DF+M G + G K
Sbjct: 302 EIE-----ITPKGGFPHYGIVRSDFMMIAGSVPGAIK 333
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 87.0 bits (206), Expect = 4e-16
Identities = 52/105 (49%), Positives = 66/105 (62%)
Frame = -3
Query: 587 RSYPVRHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGK 408
+ P + + + ACI W +VA A QKG HH T +NKKIY+IGQG K+GK
Sbjct: 193 KKVPWKTHQEFHEAACI--WD----GLSVAWARQKGCHHCT-INKKIYKIGQGYLIKNGK 245
Query: 407 VIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 273
+IKNNAST+Y KSI+P+GG H G+V NDFVM + L GT K
Sbjct: 246 IIKNNASTDY---TKSISPLGGCIHCGKVTNDFVMLKDCLVGTKK 287
Score = 81.0 bits (191), Expect = 3e-14
Identities = 36/62 (58%), Positives = 46/62 (74%)
Frame = -1
Query: 298 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 119
K C +G KKR+++L KSL + TK+ L+K+N KFIDT+SKFGHG FQ +K FMG LK
Sbjct: 279 KDCLVGTKKRVLSLCKSLLMRTKQQTLQKVNFKFIDTTSKFGHGCFQIVGEKKGFMGPLK 338
Query: 118 KD 113
KD
Sbjct: 339 KD 340
Score = 44.4 bits (100), Expect = 0.003
Identities = 22/64 (34%), Positives = 35/64 (54%)
Frame = -2
Query: 726 KVKWAREHSGEXYPCRFCVCPKMK*LTALVSPKGKGYKGVTSRWHTKKLPRKTXQGS*ES 547
K+ WA + + P +++ L + + KGK YKG++S W+TKK+P KT Q E+
Sbjct: 149 KLDWAHKKLEQQVPVNHIF--RVRRLFVIGTTKGKHYKGISSHWYTKKVPWKTHQEFHEA 206
Query: 546 CLHW 535
W
Sbjct: 207 ACIW 210
>UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S ribosomal
protein L3 (L4); n=1; Macaca mulatta|Rep: PREDICTED:
similar to 60S ribosomal protein L3 (L4) - Macaca
mulatta
Length = 153
Score = 86.2 bits (204), Expect = 8e-16
Identities = 42/66 (63%), Positives = 51/66 (77%)
Frame = -1
Query: 286 MGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRI 107
+G KK+++TL KS V TK ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LKKD+
Sbjct: 88 VGTKKQVLTLCKSSLVQTKWRALEKIDLKFIDTTSKFGHGRFQTIGEKKAFMGPLKKDQT 147
Query: 106 REEAAA 89
+E A
Sbjct: 148 AKEEGA 153
>UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep:
Ribosomal protein L3 - Mus musculus (Mouse)
Length = 67
Score = 76.6 bits (180), Expect = 6e-13
Identities = 33/47 (70%), Positives = 40/47 (85%)
Frame = -3
Query: 413 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 273
GK+IKNNAST+YDLS+KSI P+GGF HYGEV NDF+M +G + GT K
Sbjct: 1 GKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKK 47
Score = 46.8 bits (106), Expect = 6e-04
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = -1
Query: 298 KGCCMGPKKRIITLRKSLRVHTKRAALEK 212
KGC +G KKR++TLRKSL V TKR ALEK
Sbjct: 39 KGCVVGTKKRVLTLRKSLLVQTKRRALEK 67
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 64.9 bits (151), Expect = 2e-09
Identities = 39/106 (36%), Positives = 56/106 (52%)
Frame = -3
Query: 599 VGTQRSYPVRHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 420
+ TQ+ R K R V +G W+P R+ + V + GQ GYH RTE NK+I ++G
Sbjct: 219 IATQKRKHARTGKK-RHVGNLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRILKMG----- 272
Query: 419 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 282
D +E+ ITP GGF HYG + ND++M +G + G
Sbjct: 273 --------------DKAEE-ITPAGGFLHYGLIRNDYIMLKGSIPG 303
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 62.5 bits (145), Expect = 1e-08
Identities = 38/95 (40%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Frame = -3
Query: 563 KGL-RKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNAS 387
KG+ R V IG W P V ++V GQ GYH RTE NK+I +IG NN
Sbjct: 226 KGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIG------------NNGD 273
Query: 386 TEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 282
ITP GGF HYG + N++V+ +G + G
Sbjct: 274 --------EITPKGGFLHYGVIRNNYVVLKGSVQG 300
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 62.1 bits (144), Expect = 1e-08
Identities = 40/97 (41%), Positives = 51/97 (52%)
Frame = -3
Query: 572 RHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 393
R KG R + IG PSRV +TV AGQ GYH RTE NK+I +IG+ DG
Sbjct: 231 RKQKG-RHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIGE-----DG------ 278
Query: 392 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 282
+ +TP GGF +YG V D++M G + G
Sbjct: 279 ---------EEVTPRGGFVNYGVVRGDYIMIHGTVPG 306
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 59.3 bits (137), Expect = 1e-07
Identities = 33/91 (36%), Positives = 47/91 (51%)
Frame = -3
Query: 554 RKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYD 375
R++ +G W+PSRV TV + GQ GYH RTE+NK++ I G
Sbjct: 232 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEP--------------- 276
Query: 374 LSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 282
TP GGFP+YGEV+ + + +G + G
Sbjct: 277 ------TPDGGFPNYGEVDGPYTLVKGSVPG 301
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 58.4 bits (135), Expect = 2e-07
Identities = 38/97 (39%), Positives = 50/97 (51%)
Frame = -3
Query: 572 RHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 393
++ K R++ +G + V T+ +AGQ GYH RTE NK+I RI
Sbjct: 227 KNSKRRRQIGNMGDFGTGYVRKTIRQAGQTGYHQRTEYNKRILRI--------------- 271
Query: 392 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 282
A E E ITP GGF HYGEV N +++ QG L G
Sbjct: 272 AGEE----ESQITPAGGFLHYGEVKNHYMIIQGSLPG 304
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 57.2 bits (132), Expect = 4e-07
Identities = 34/97 (35%), Positives = 50/97 (51%)
Frame = -3
Query: 572 RHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 393
++ K R++ +G + V T+ +AGQ GYH RTE+NK+I RI
Sbjct: 247 KNSKRRRQIGNMGDFGTGYVRKTIRQAGQMGYHKRTELNKRILRIS-------------- 292
Query: 392 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 282
+ E +TP GGF HYGEV N +++ +G L G
Sbjct: 293 -----NPGESDVTPAGGFLHYGEVTNPYMVLEGSLPG 324
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 55.2 bits (127), Expect = 2e-06
Identities = 31/95 (32%), Positives = 49/95 (51%)
Frame = -3
Query: 563 KGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNAST 384
K +R++ +G P V +TV RAGQ G+H R E NK+I +G G+
Sbjct: 224 KTVRELGSLGPISPQNVMYTVPRAGQMGFHQRIEYNKRIMAVGSA-----GE-------- 270
Query: 383 EYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT 279
+ +I P GG+ H+G V D+++ +G + GT
Sbjct: 271 -----DDAINPSGGYKHFGMVKGDYIVLKGSVPGT 300
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 54.0 bits (124), Expect = 4e-06
Identities = 26/53 (49%), Positives = 34/53 (64%)
Frame = -3
Query: 563 KGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKV 405
KG+RKV IG+ P R+ TV GQ GYH RTE NK I +IG+ ++ + G V
Sbjct: 218 KGVRKVGAIGSRGPGRIFPTVPMPGQMGYHRRTEYNKLIIKIGEPLNVEGGWV 270
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 53.2 bits (122), Expect = 7e-06
Identities = 33/100 (33%), Positives = 50/100 (50%)
Frame = -3
Query: 572 RHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 393
+H KG ++ +G P+ + F GQ G+H RTE NK+I ++G D +
Sbjct: 222 KHRKGHSRIGSVGPQKPA-IMFYTPFPGQLGFHQRTEYNKRILKVG------DAE----- 269
Query: 392 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 273
S K I P GG+PHYG V + F++ +G + G K
Sbjct: 270 -------SLKEINPPGGWPHYGLVRSQFIIVEGSVPGAVK 302
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 52.8 bits (121), Expect = 9e-06
Identities = 34/99 (34%), Positives = 47/99 (47%)
Frame = -3
Query: 578 PVRHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 399
P ++ K R + +G WHP V TV +AGQ GY RT N ++ + +G
Sbjct: 216 PRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVRVLKYSKG---------- 265
Query: 398 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 282
+A T I GGF HYG V ND+V+ G + G
Sbjct: 266 EDADT--------INVRGGFLHYGLVKNDYVLLFGSVPG 296
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 52.4 bits (120), Expect = 1e-05
Identities = 33/94 (35%), Positives = 49/94 (52%)
Frame = -3
Query: 563 KGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNAST 384
K +R+V +G P V +TV RAGQ G+H R E +K+I +G +T
Sbjct: 226 KTVREVGSLGPISPQSVMYTVPRAGQFGFHQRVEYDKRIMIMG---------------NT 270
Query: 383 EYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 282
+ D + I P GGF H+G V DF++ +G + G
Sbjct: 271 DDD--KLKINPDGGFKHFGLVKGDFIVLKGSVPG 302
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 46.8 bits (106), Expect = 6e-04
Identities = 37/101 (36%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = -3
Query: 572 RHXKGLRKVACIGAWHPSRVSF-TVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKN 396
+H KG R+ IGA R +F +AGQ G+H RTE NK+I I +K
Sbjct: 231 KHRKGSRR---IGARSHGRSTFWETPQAGQTGFHRRTEYNKRILMIDDDGYK-------- 279
Query: 395 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 273
+TP GGF YG V + FVM G + GT K
Sbjct: 280 ------------VTPAGGFLRYGVVRSTFVMLSGSIPGTPK 308
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 45.6 bits (103), Expect = 0.001
Identities = 34/100 (34%), Positives = 46/100 (46%)
Frame = -3
Query: 572 RHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 393
+H KG RK+ G S+T + GQ G+H RTE NK+I +IG
Sbjct: 243 KHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD------------- 287
Query: 392 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 273
K I P GGF YG V N +V+ +G + G+ K
Sbjct: 288 -------EPKEINPAGGFVRYGIVRNTYVLLEGSILGSKK 320
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 38.7 bits (86), Expect = 0.15
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = -3
Query: 572 RHXKGLRKVACIGAWHPSRVSFT-VARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKN 396
+H KG RK IG+ P + + + GQ G+H RTE NK+I +IG
Sbjct: 285 KHRKGSRK---IGSRSPGFGTMSETPQPGQMGFHRRTEYNKRIIKIG------------- 328
Query: 395 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 282
++ +TP GGF YG V ++M G + G
Sbjct: 329 -------INGWEVTPKGGFLGYGIVYGPYIMLHGSIIG 359
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 37.1 bits (82), Expect = 0.47
Identities = 29/97 (29%), Positives = 43/97 (44%)
Frame = -3
Query: 572 RHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 393
+H KG R+V +W S+ V + GQ GYH RT+ NK++ I K
Sbjct: 248 KHRKGSRRVGA-RSWGKGTSSY-VPQPGQMGYHRRTDYNKRVLMISDDPSK--------- 296
Query: 392 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 282
I GG+ HYG V + +V+ +G + G
Sbjct: 297 -----------INVEGGWLHYGLVKSKYVVLKGSVFG 322
>UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-12
- Homo sapiens (Human)
Length = 103
Score = 35.5 bits (78), Expect = 1.4
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = -2
Query: 246 CVCIQRGLH*KRSTSNSLTPRPSSVMVDSRRRLTRLHSWVH 124
C C + G +R T +SLTP PS M SR R HSW H
Sbjct: 63 CWCRRSGGLWRRLTLSSLTPPPSLAMAASRPWRRRKHSWDH 103
>UniRef50_Q2BFU2 Cluster: RTX toxins and related Ca2+-binding
protein; n=2; Bacillus sp. NRRL B-14911|Rep: RTX toxins
and related Ca2+-binding protein - Bacillus sp. NRRL
B-14911
Length = 1415
Score = 34.7 bits (76), Expect = 2.5
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 413 GKVIKNNASTEYD-LSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 282
G VI+ N D LS K++T MG EV NDF M ++HG
Sbjct: 299 GAVIEGNVKVSGDFLSLKNLTIMGDLEIAKEVENDFYMEDAIVHG 343
>UniRef50_Q8TB36 Cluster: Ganglioside-induced
differentiation-associated protein 1; n=37;
Euteleostomi|Rep: Ganglioside-induced
differentiation-associated protein 1 - Homo sapiens
(Human)
Length = 358
Score = 34.3 bits (75), Expect = 3.3
Identities = 23/72 (31%), Positives = 36/72 (50%)
Frame = +3
Query: 465 STVMITFLTSTSYSERHPRRMPSSNAGNFPKTLXVSYGVASLCANEK*HLCILCPWVTPM 644
+T +I +L T ER PR MP + +P+ + SL + H CIL P +T +
Sbjct: 90 ATQIIDYLEQTFLDERTPRLMPDKESMYYPRVQHYRELLDSLPMDAYTHGCILHPELT-V 148
Query: 645 QSIISSWGKHRI 680
S+I ++ RI
Sbjct: 149 DSMIPAYATTRI 160
>UniRef50_A6SJW6 Cluster: Translation initiation factor eIF3; n=2;
Sclerotiniaceae|Rep: Translation initiation factor eIF3
- Botryotinia fuckeliana B05.10
Length = 600
Score = 33.9 bits (74), Expect = 4.4
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +2
Query: 20 CIVKCLFSRTTLKAAQQPRWGCGSRSFFANTILLECTHECSLVSRRLESTMTELGRG 190
C + +FS T + Q +G G+ S FA L E S+VS +ST T GRG
Sbjct: 81 CYLFAIFSTCTGRKLDQQVYGAGTSSLFA-VQLAEDESTFSVVSNTRDSTKTRFGRG 136
>UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 1482
Score = 33.5 bits (73), Expect = 5.8
Identities = 19/67 (28%), Positives = 35/67 (52%)
Frame = +3
Query: 297 LXHHKVVVYFTIMGETSHRCNGFLRQIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVM 476
L H ++ YF + +SH +II + +++NNFA +F+ L D V+F+ +
Sbjct: 463 LFFHSLIQYFVYLNNSSHILINHKDKIIFIKHLLYNNFAQMFLKYL---CDNYVYFTPIN 519
Query: 477 ITFLTST 497
I + S+
Sbjct: 520 ILSIYSS 526
>UniRef50_Q7Q3S5 Cluster: ENSANGP00000012392; n=2; Culicidae|Rep:
ENSANGP00000012392 - Anopheles gambiae str. PEST
Length = 250
Score = 33.1 bits (72), Expect = 7.6
Identities = 24/97 (24%), Positives = 34/97 (35%)
Frame = -3
Query: 572 RHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 393
RH + V + P S T +R + RT + +Y G N
Sbjct: 27 RHTQNSLNVPIVVQPAPVSASSTASRYASTAHEQRTGASGPVYYAPAAGASTYGSQYSNT 86
Query: 392 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 282
A++ S GGF HY N+DF G + G
Sbjct: 87 AASSSHNSRYKAGSAGGFVHYPIANDDFGRRFGAVGG 123
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 774,765,041
Number of Sequences: 1657284
Number of extensions: 16193384
Number of successful extensions: 37735
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 36547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37718
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62558016040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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