Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_I03
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   124   2e-29
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   124   2e-29
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    29   0.72 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.2  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    27   2.9  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   3.8  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   6.7  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   8.8  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  124 bits (298), Expect = 2e-29
 Identities = 63/105 (60%), Positives = 73/105 (69%)
 Frame = -3

Query: 596 GTQRSYPVRHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 417
           GT+R  P +  +GLRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G    
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289

Query: 416 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 282
           D K    NAST++D +EK ITPMGGF  YG V NDFVM  G   G
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330



 Score = 91.9 bits (218), Expect = 9e-20
 Identities = 41/61 (67%), Positives = 49/61 (80%)
 Frame = -1

Query: 295 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 116
           G   GP KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385

Query: 115 D 113
           D
Sbjct: 386 D 386



 Score = 46.0 bits (104), Expect = 6e-06
 Identities = 22/56 (39%), Positives = 34/56 (60%)
 Frame = -2

Query: 726 KVKWAREHSGEXYPCRFCVCPKMK*LTALVSPKGKGYKGVTSRWHTKKLPRKTXQG 559
           KV+WAREH  +    +     + + +  +   +GKG +G T+RW TK+LPRKT +G
Sbjct: 191 KVEWAREHFEKTVDIK-STFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRG 245


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  124 bits (298), Expect = 2e-29
 Identities = 63/105 (60%), Positives = 73/105 (69%)
 Frame = -3

Query: 596 GTQRSYPVRHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 417
           GT+R  P +  +GLRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G    
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289

Query: 416 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 282
           D K    NAST++D +EK ITPMGGF  YG V NDFVM  G   G
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330



 Score = 91.9 bits (218), Expect = 9e-20
 Identities = 41/61 (67%), Positives = 49/61 (80%)
 Frame = -1

Query: 295 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 116
           G   GP KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385

Query: 115 D 113
           D
Sbjct: 386 D 386



 Score = 46.0 bits (104), Expect = 6e-06
 Identities = 22/56 (39%), Positives = 34/56 (60%)
 Frame = -2

Query: 726 KVKWAREHSGEXYPCRFCVCPKMK*LTALVSPKGKGYKGVTSRWHTKKLPRKTXQG 559
           KV+WAREH  +    +     + + +  +   +GKG +G T+RW TK+LPRKT +G
Sbjct: 191 KVEWAREHFEKTVDIK-STFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRG 245


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 405 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 503
           NFA+L+  SL ++ +F++H +T    +   T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 372 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 494
           ++ L RC++   F +LF  S S +  FL   S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 201 NSLTPRPSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRL 88
           NS+ PR   +    R+ L  L +  HS+R  F  KL +
Sbjct: 614 NSINPRDKVIWHTRRKELAALKTGAHSQRCDFNYKLEI 651


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 134 HGYTQEGSYSRRSCGYHNPS 75
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 357 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 485
           N FL  +  SRC V  N+ I + V S    ++F++     M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 417 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 542
           LF+D LS   D L+H   ++ +    T  S  H      SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,178,559
Number of Sequences: 5004
Number of extensions: 66950
Number of successful extensions: 180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)