Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_I03
         (757 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               151   5e-37
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         111   6e-25
SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)               97   1e-20
SB_13763| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.4  
SB_5912| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-08)                  28   9.4  

>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  151 bits (367), Expect = 5e-37
 Identities = 77/118 (65%), Positives = 89/118 (75%)
 Frame = -3

Query: 701 LEXPIPVDSVFAPR*ND*LHWCHPRAKDTKVSLLVGTQRSYPVRHXKGLRKVACIGAWHP 522
           LE P PV  VF+P     +           V+   GT++  P +  KGLRKVACIGAWHP
Sbjct: 201 LENPAPVRKVFSPDEMIDVIGVTKGHGFKGVTYRWGTKK-LPRKTHKGLRKVACIGAWHP 259

Query: 521 SRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPM 348
           +RVSF+VARAGQ GYHHRTE+NKKIYRIGQGIHKKDGKVIKNNASTEYDL++KSI+PM
Sbjct: 260 ARVSFSVARAGQAGYHHRTELNKKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSISPM 317


>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  111 bits (267), Expect = 6e-25
 Identities = 53/75 (70%), Positives = 59/75 (78%)
 Frame = -1

Query: 298 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 119
           KGC +GPKKR++TLRKSL VHT R A EKI LKFIDTSSKFGHGRFQ PA+K AFMG LK
Sbjct: 231 KGCVVGPKKRVLTLRKSLLVHTSRDAAEKITLKFIDTSSKFGHGRFQHPAEKRAFMGMLK 290

Query: 118 KDRIREEAAATTTPA 74
            DR +E AA   + A
Sbjct: 291 SDREKELAAGAESAA 305



 Score = 38.3 bits (85), Expect = 0.007
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = -3

Query: 347 GGFPHYGEVNNDFVMXQGLLHG 282
           GGFPHYG+VN DF+M +G + G
Sbjct: 215 GGFPHYGQVNEDFLMVKGCVVG 236


>SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 42/45 (93%), Positives = 45/45 (100%)
 Frame = -3

Query: 482 GYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPM 348
           GYHHRTE+NKKIYRIGQGIHKKDGKVIKNNASTEYDL++KSITPM
Sbjct: 2   GYHHRTELNKKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSITPM 46


>SB_13763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +3

Query: 465 STVMITFLTSTSYSERHPRRMPSSNAGNFPKTLXVSYGVASLCANEK*HLCILCPW 632
           S   I+F  +T Y +RH RR  S N  +F   +    G ++L  N K      CP+
Sbjct: 96  SRTPISFPNTTQYRDRHARRSRSQNGVSFLINIATLVGDSALGTNIKPAPYSSCPF 151


>SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +3

Query: 330 IMGETSHRCNGFLRQIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLT 491
           ++GE       FLR++ +S C++  N+   F   +    D L+ F++  + F T
Sbjct: 274 VLGENFQDLARFLRELQISPCLMVLNYPSFFSADIQKLNDALMFFTSRPLLFET 327


>SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 277 KKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMG 128
           K R++  +K  ++H+  +   K  ++F+   SKF H    T A   A  G
Sbjct: 317 KDRLLEWKKERQIHSFSSTTLKARIRFVAAMSKFAHTTEDTTAWDEATKG 366


>SB_5912| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-08)
          Length = 337

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +3

Query: 339 ETSHRCNGFLRQIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 503
           ETS R   FLRQ+ ++ C +   FA++ +     T + LV FS      L+  SY
Sbjct: 9   ETSLRYVSFLRQVYIANCALNAIFAVIAI-----TGNLLVLFSIWKCRLLSEPSY 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,440,811
Number of Sequences: 59808
Number of extensions: 528715
Number of successful extensions: 1098
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)