Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_I03
         (757 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi...   134   6e-32
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi...   132   3e-31
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi...   132   3e-31
At3g60400.1 68416.m06755 mitochondrial transcription termination...    29   3.3  
At2g37720.1 68415.m04625 expressed protein                             29   3.3  
At1g73430.1 68414.m08500 sec34-like family protein contains Pfam...    28   5.8  
At5g22400.1 68418.m02613 rac GTPase activating protein, putative...    28   7.7  
At3g42770.1 68416.m04468 F-box family protein contains F-box dom...    28   7.7  

>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
           to ribosomal protein GI:806279 from [Arabidopsis
           thaliana]
          Length = 390

 Score =  134 bits (324), Expect = 6e-32
 Identities = 63/99 (63%), Positives = 76/99 (76%)
 Frame = -3

Query: 578 PVRHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 399
           P +  +GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+YR+G     K G+   
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVG-----KVGQE-T 295

Query: 398 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 282
           ++A TEYD +EK ITPMGGFPHYG V  D++M +G   G
Sbjct: 296 HSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVG 334



 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 37/61 (60%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
 Frame = -1

Query: 298 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMG-TL 122
           KGCC+GPKKR++TLR++L   T R A+E+I LKFID +S  GHGRFQT  +KA F G T+
Sbjct: 329 KGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGRTI 388

Query: 121 K 119
           K
Sbjct: 389 K 389



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = -2

Query: 630 KGKGYKGVTSRWHTKKLPRKTXQG 559
           KGKGY+GV +RW   +LPRKT +G
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRG 248



 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -1

Query: 757 IQXNXGTIXXXSEMGQRTFWRXLSLSILCLPQDEMIDCIGVTQGQ 623
           IQ N G I    +     F + + +  +   +DEMID IGVT+G+
Sbjct: 184 IQINGGDIAKKVDYACSLFEKQVPVDAI-FQKDEMIDIIGVTKGK 227


>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  132 bits (318), Expect = 3e-31
 Identities = 62/99 (62%), Positives = 75/99 (75%)
 Frame = -3

Query: 578 PVRHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 399
           P +  +GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTE+NKKIYR+G     K G    
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLG-----KVG-TEA 295

Query: 398 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 282
           + A TEYD +EK +TPMGGFPHYG V +D++M +G   G
Sbjct: 296 HTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVG 334



 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 38/61 (62%), Positives = 46/61 (75%)
 Frame = -1

Query: 298 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 119
           KGCC+GPKKR++TLR+SL   T R ALE+I LKFIDT+S FGHGRFQT  +K  F   + 
Sbjct: 329 KGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVT 388

Query: 118 K 116
           K
Sbjct: 389 K 389



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = -2

Query: 630 KGKGYKGVTSRWHTKKLPRKTXQG 559
           KGKGY+GV +RW   +LPRKT +G
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRG 248



 Score = 31.9 bits (69), Expect = 0.47
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -1

Query: 757 IQXNXGTIXXXSEMGQRTFWRXLSLSILCLPQDEMIDCIGVTQGQ 623
           IQ N GTI    +     F + + +  +   +DEMID IGVT+G+
Sbjct: 184 IQINGGTIAQKVDFAYSFFEKQIPIEAV-FQKDEMIDIIGVTKGK 227


>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  132 bits (318), Expect = 3e-31
 Identities = 62/99 (62%), Positives = 75/99 (75%)
 Frame = -3

Query: 578 PVRHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 399
           P +  +GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTE+NKKIYR+G     K G    
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLG-----KVG-TEA 295

Query: 398 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 282
           + A TEYD +EK +TPMGGFPHYG V +D++M +G   G
Sbjct: 296 HTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVG 334



 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 38/61 (62%), Positives = 46/61 (75%)
 Frame = -1

Query: 298 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 119
           KGCC+GPKKR++TLR+SL   T R ALE+I LKFIDT+S FGHGRFQT  +K  F   + 
Sbjct: 329 KGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVT 388

Query: 118 K 116
           K
Sbjct: 389 K 389



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = -2

Query: 630 KGKGYKGVTSRWHTKKLPRKTXQG 559
           KGKGY+GV +RW   +LPRKT +G
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRG 248



 Score = 31.9 bits (69), Expect = 0.47
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -1

Query: 757 IQXNXGTIXXXSEMGQRTFWRXLSLSILCLPQDEMIDCIGVTQGQ 623
           IQ N GTI    +     F + + +  +   +DEMID IGVT+G+
Sbjct: 184 IQINGGTIAQKVDFAYSFFEKQIPIEAV-FQKDEMIDIIGVTKGK 227


>At3g60400.1 68416.m06755 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 558

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -3

Query: 479 YHHRTEMNKKIYRIGQGIHKKDGK--VIKNNASTEYDLSEKSITPMGGFPHYG 327
           Y     MNK  Y    G+ K+D    +++N A   +DL +  I+  G   H+G
Sbjct: 262 YSEEALMNKAGYFCRFGVSKEDAALLILRNPAIMNFDLEKPVISVTGMLKHFG 314


>At2g37720.1 68415.m04625 expressed protein 
          Length = 482

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 668 APR*ND*LHWCHPRAKDTKVSLLV 597
           AP  ND LHWC P   DT   LL+
Sbjct: 456 APTFNDCLHWCLPGIPDTWNELLI 479


>At1g73430.1 68414.m08500 sec34-like family protein contains Pfam
           PF04136: Sec34-like family profile; similar to Conserved
           oligomeric Golgi complex component 3 (Vesicle docking
           protein SEC34 homolog) (p94) (Swiss-Prot:Q96JB2) [Homo
           sapiens]
          Length = 784

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -2

Query: 156 RRLTRLHSWVHSRRIVFAKKLRLPQPQRGCCAALSVVRENKH 31
           +RL+ +   VH R   FAKK  LP   R  CA L  V   +H
Sbjct: 328 QRLSLVKGIVHQRVSDFAKKEALPSLTRSGCAYLMQVCHMEH 369


>At5g22400.1 68418.m02613 rac GTPase activating protein, putative
           similar to rac GTPase activating protein 1 [Lotus
           japonicus] GI:3695059; contains Pfam profile PF00620:
           RhoGAP domain
          Length = 466

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -2

Query: 210 STSNSLTPRPSSVMVDSRRRLTRLHSWVHSRR 115
           S+S+S +P PSS+   SR   T L S  H+RR
Sbjct: 17  SSSSSSSPSPSSLSYASRSNATLLISSDHNRR 48


>At3g42770.1 68416.m04468 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 532

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = +3

Query: 378 ILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNAGNFPK 557
           ++  CI   +  +LF+DS+   +   + F T        T Y + H   MP   +    K
Sbjct: 151 VVPNCISLPSLKVLFLDSIWFEVPQFLIFLTACPALEDLTIYQKPHSVGMPYHISSKTIK 210

Query: 558 TLXVSY 575
            L V+Y
Sbjct: 211 RLSVTY 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,866,965
Number of Sequences: 28952
Number of extensions: 366126
Number of successful extensions: 901
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)