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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_I02
         (776 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary...   234   2e-60
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi...   233   5e-60
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;...   180   5e-44
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr...   164   3e-39
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella...   130   3e-29
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n...   129   9e-29
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ...   117   4e-25
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc...   113   6e-24
UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S riboso...    85   2e-15
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc...    81   4e-14
UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep: ...    77   7e-13
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m...    75   2e-12
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m...    74   5e-12
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N...    73   8e-12
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc...    73   1e-11
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar...    72   1e-11
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc...    71   3e-11
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop...    66   7e-10
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi...    65   2e-09
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop...    65   2e-09
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha...    62   1e-08
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc...    62   2e-08
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop...    59   1e-07
UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ...    58   3e-07
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo...    53   7e-06
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ...    44   0.006
UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-...    36   1.5  
UniRef50_Q2BFU2 Cluster: RTX toxins and related Ca2+-binding pro...    35   2.6  
UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1; ...    33   6.0  

>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
           Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
           (Human)
          Length = 403

 Score =  234 bits (573), Expect = 2e-60
 Identities = 109/160 (68%), Positives = 125/160 (78%)
 Frame = -3

Query: 747 IQXXGVPSRXKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPR 568
           IQ  G     K+ W RE LE+ +PV+ VF QDEMID I           TSRWHTKKLPR
Sbjct: 183 IQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPR 242

Query: 567 KTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 388
           KTH+GLRKVACIGAWHP+RV+F+VARAGQKGYHHRTE+NKKIY+IGQG   KDGK+IKNN
Sbjct: 243 KTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNN 302

Query: 387 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 268
           AST+YDLS+KSI P+GGF HYGEV NDFVM +G + GT K
Sbjct: 303 ASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKK 342



 Score =  106 bits (255), Expect = 5e-22
 Identities = 50/67 (74%), Positives = 57/67 (85%)
 Frame = -1

Query: 293 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 114
           KGC +G KKR++TLRKSL V TKR ALEKI+LKFIDT+SKFGHGRFQT  +K AFMG LK
Sbjct: 334 KGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393

Query: 113 KDRIREE 93
           KDRI +E
Sbjct: 394 KDRIAKE 400


>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
           Bilateria|Rep: 60S ribosomal protein L3-like - Homo
           sapiens (Human)
          Length = 407

 Score =  233 bits (569), Expect = 5e-60
 Identities = 106/160 (66%), Positives = 124/160 (77%)
 Frame = -3

Query: 747 IQXXGVPSRXKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPR 568
           IQ  G     KV W +  LEK +PV SVF+Q E+ID I           TSRWHTKKLPR
Sbjct: 183 IQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPR 242

Query: 567 KTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 388
           KTHKGLRKVACIGAWHP+RV  ++ARAGQKGYHHRTE+NKKI+RIG+G H +DGK++KNN
Sbjct: 243 KTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHMEDGKLVKNN 302

Query: 387 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 268
           AST YD++ KSITP+GGFPHYGEVNNDFVM +G + GT K
Sbjct: 303 ASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKK 342



 Score = 91.9 bits (218), Expect = 2e-17
 Identities = 44/66 (66%), Positives = 49/66 (74%)
 Frame = -1

Query: 293 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 114
           KGC  G KKR+ITLRKSL VH  R A+E I LKFIDT+SKFGHGRFQT  +K AFMG  K
Sbjct: 334 KGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393

Query: 113 KDRIRE 96
           K   +E
Sbjct: 394 KHLEKE 399


>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
           n=1; Caenorhabditis elegans|Rep: Putative
           uncharacterized protein rpl-3 - Caenorhabditis elegans
          Length = 353

 Score =  180 bits (437), Expect = 5e-44
 Identities = 84/130 (64%), Positives = 99/130 (76%)
 Frame = -3

Query: 666 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARA 487
           V A  +MID I           TSRWHTKKLPRKTHKGLRKVACIGAWHPSRV+FTVARA
Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARA 221

Query: 486 GQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNND 307
           GQKG+HHRT +N KIYRIG+    ++G   KNN STE+DL++K+ITPMGGFP YG VN D
Sbjct: 222 GQKGFHHRTIINNKIYRIGKSALTEEG---KNNGSTEFDLTQKTITPMGGFPRYGIVNQD 278

Query: 306 FVMXQGLLHG 277
           ++M +G + G
Sbjct: 279 YIMLRGAVLG 288



 Score = 96.3 bits (229), Expect = 8e-19
 Identities = 46/66 (69%), Positives = 53/66 (80%)
 Frame = -1

Query: 293 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 114
           +G  +GPKKR+ITLRKSL   TKR A EKINLK+IDTSSK GHGRFQT A+K AFMG LK
Sbjct: 283 RGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 342

Query: 113 KDRIRE 96
           +D + E
Sbjct: 343 RDFLAE 348


>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
           Trypanosomatidae|Rep: Ribosomal protein L3, putative -
           Trypanosoma brucei
          Length = 480

 Score =  164 bits (398), Expect = 3e-39
 Identities = 80/157 (50%), Positives = 99/157 (63%)
 Frame = -3

Query: 747 IQXXGVPSRXKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPR 568
           IQ  G     K++  +  LEK + +DSVF Q E  D               RW    LPR
Sbjct: 237 IQINGGTIAQKIELAKSLLEKEVRIDSVFQQSEACDVCAVTKGHGFTGVVKRWGVACLPR 296

Query: 567 KTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 388
           KTH+GLRKVACIGAWHPSRV +TVARAGQ GYHHRT +NKKIY++G+ +  +      N 
Sbjct: 297 KTHRGLRKVACIGAWHPSRVMYTVARAGQHGYHHRTHLNKKIYQLGRAVSME-----PNQ 351

Query: 387 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 277
           A+T YDL+ K+ITPMGGF  YG V ND+VM +G + G
Sbjct: 352 ATTAYDLTAKTITPMGGFVGYGTVRNDYVMLKGSVAG 388



 Score = 86.6 bits (205), Expect = 6e-16
 Identities = 40/67 (59%), Positives = 48/67 (71%)
 Frame = -1

Query: 293 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 114
           KG   GP++R+ITLR+ +   T R   EKI LKFIDTSSK GHGRFQT  +K+ + G LK
Sbjct: 383 KGSVAGPRRRVITLRRPMAPQTSRKLTEKITLKFIDTSSKIGHGRFQTKKEKSQWYGPLK 442

Query: 113 KDRIREE 93
           KDRIR E
Sbjct: 443 KDRIRRE 449


>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
           natans|Rep: Ribosomal protein L3 - Bigelowiella natans
           (Pedinomonas minutissima) (Chlorarachnion sp.(strain
           CCMP 621))
          Length = 370

 Score =  130 bits (315), Expect = 3e-29
 Identities = 67/167 (40%), Positives = 101/167 (60%)
 Frame = -3

Query: 768 KRXSHYXIQXXGVPSRXKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRW 589
           K+   +     G   + K+++  +   K I ++S+F ++++ID I            SRW
Sbjct: 158 KKKYFFETDIIGGSPKMKLEFWLKLNNKKIYINSIFHENDIIDAIGITKGHGTKGVVSRW 217

Query: 588 HTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKD 409
              +LPRKTH+GLRKVACIG W PSRV++T++RAGQKGYH RT  NKKIY+IG    +++
Sbjct: 218 GITRLPRKTHRGLRKVACIGPWTPSRVAWTISRAGQKGYHKRTLFNKKIYKIGS---EEN 274

Query: 408 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 268
                N+ S   D   KS+  MGGF  +G +NND+++ +G + G+ K
Sbjct: 275 FSYYSNSLS---DSIVKSVNCMGGFKKFGFINNDYLIIKGSMTGSSK 318



 Score = 55.2 bits (127), Expect = 2e-06
 Identities = 27/56 (48%), Positives = 36/56 (64%)
 Frame = -1

Query: 293 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFM 126
           KG   G  KR I LRK+++        EKI LK++DTSSK GHGR+++ ADK + M
Sbjct: 310 KGSMTGSSKRPILLRKNIKNKISSVITEKIILKYVDTSSKRGHGRYESSADKFSKM 365


>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
           Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
           Rattus norvegicus
          Length = 380

 Score =  129 bits (311), Expect = 9e-29
 Identities = 65/123 (52%), Positives = 82/123 (66%)
 Frame = -3

Query: 657 QDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQK 478
           QDE+ID I           T     +  P +  +G  K+ C+GAWHP+RV+F+VA+ GQK
Sbjct: 193 QDEIIDVIKETKGNGYKGVTRVDIQRNCPERPIEGCPKL-CVGAWHPARVTFSVAQVGQK 251

Query: 477 GYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVM 298
           GYHH  + NKKI +IGQG   KDGK+IKNNA TEY LS+KSI  +GGF HYGEV NDF+ 
Sbjct: 252 GYHHNGD-NKKICKIGQGYLIKDGKLIKNNAPTEYHLSDKSINLLGGFVHYGEVTNDFIR 310

Query: 297 XQG 289
            +G
Sbjct: 311 LKG 313



 Score = 58.4 bits (135), Expect = 2e-07
 Identities = 33/67 (49%), Positives = 42/67 (62%)
 Frame = -1

Query: 293 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 114
           KGC +  KK + T+ K L V T + AL+KI+ K  DT+ K GHG FQT   K AF+G LK
Sbjct: 312 KGCAVRTKKHL-TICKYLLVQTIQWALKKIDPKLNDTTYKVGHGCFQTTEGKRAFIGPLK 370

Query: 113 KDRIREE 93
           K+   EE
Sbjct: 371 KECTAEE 377


>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
           RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
           60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
           B) (TARBP-B). - Bos Taurus
          Length = 340

 Score =  117 bits (281), Expect = 4e-25
 Identities = 68/150 (45%), Positives = 90/150 (60%)
 Frame = -3

Query: 717 KVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVA 538
           K+ W  + LE+ +PV+ +F    +   I           +S W+TKK+P KTH+   + A
Sbjct: 149 KLDWAHKKLEQQVPVNHIFRVRRLF-VIGTTKGKHYKGISSHWYTKKVPWKTHQEFHEAA 207

Query: 537 CIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEK 358
           CI  W       +VA A QKG HH T +NKKIY+IGQG   K+GK+IKNNAST+Y    K
Sbjct: 208 CI--WD----GLSVAWARQKGCHHCT-INKKIYKIGQGYLIKNGKIIKNNASTDY---TK 257

Query: 357 SITPMGGFPHYGEVNNDFVMXQGLLHGT*K 268
           SI+P+GG  H G+V NDFVM +  L GT K
Sbjct: 258 SISPLGGCIHCGKVTNDFVMLKDCLVGTKK 287



 Score = 81.0 bits (191), Expect = 3e-14
 Identities = 36/62 (58%), Positives = 46/62 (74%)
 Frame = -1

Query: 293 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 114
           K C +G KKR+++L KSL + TK+  L+K+N KFIDT+SKFGHG FQ   +K  FMG LK
Sbjct: 279 KDCLVGTKKRVLSLCKSLLMRTKQQTLQKVNFKFIDTTSKFGHGCFQIVGEKKGFMGPLK 338

Query: 113 KD 108
           KD
Sbjct: 339 KD 340


>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
           Thermococcaceae|Rep: 50S ribosomal protein L3P -
           Pyrococcus furiosus
          Length = 365

 Score =  113 bits (271), Expect = 6e-24
 Identities = 63/156 (40%), Positives = 84/156 (53%)
 Frame = -3

Query: 735 GVPSRXKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHK 556
           G     K  + +E L K + V  V  + E++D I             RW  K    K  K
Sbjct: 189 GTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSK 248

Query: 555 GLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTE 376
           G RKV  IG WHP+RV +TV  AGQ G+HHRTE+NK++  IG+     +GK +K + +TE
Sbjct: 249 GRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE-----NGK-LKLDENTE 302

Query: 375 YDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 268
            +     ITP GGFPHYG V +DF+M  G + G  K
Sbjct: 303 IE-----ITPKGGFPHYGIVRSDFMMIAGSVPGAIK 333


>UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S ribosomal
           protein L3 (L4); n=1; Macaca mulatta|Rep: PREDICTED:
           similar to 60S ribosomal protein L3 (L4) - Macaca
           mulatta
          Length = 153

 Score = 85.0 bits (201), Expect = 2e-15
 Identities = 41/63 (65%), Positives = 50/63 (79%)
 Frame = -1

Query: 281 MGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRI 102
           +G KK+++TL KS  V TK  ALEKI+LKFIDT+SKFGHGRFQT  +K AFMG LKKD+ 
Sbjct: 88  VGTKKQVLTLCKSSLVQTKWRALEKIDLKFIDTTSKFGHGRFQTIGEKKAFMGPLKKDQT 147

Query: 101 REE 93
            +E
Sbjct: 148 AKE 150


>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
           Euryarchaeota|Rep: 50S ribosomal protein L3P -
           Methanococcus jannaschii
          Length = 335

 Score = 80.6 bits (190), Expect = 4e-14
 Identities = 52/166 (31%), Positives = 76/166 (45%), Gaps = 2/166 (1%)
 Frame = -3

Query: 768 KRXSHYXIQXXGVPSRXKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRW 589
           K+     I+  G     ++ + +E L K + +  VF + E++D I             RW
Sbjct: 155 KKPEILEIRIGGKDIEERLNYAKEILGKQLNITDVFQEGELVDTIGVTKGKGFQGQVKRW 214

Query: 588 HTK-KLPRKTHKGL-RKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 415
             K +  +   KG+ R V  IG W P  V ++V   GQ GYH RTE NK+I +IG     
Sbjct: 215 GVKIQFGKHARKGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIG----- 269

Query: 414 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 277
                  NN           ITP GGF HYG + N++V+ +G + G
Sbjct: 270 -------NNGD--------EITPKGGFLHYGVIRNNYVVLKGSVQG 300


>UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep:
           Ribosomal protein L3 - Mus musculus (Mouse)
          Length = 67

 Score = 76.6 bits (180), Expect = 7e-13
 Identities = 33/47 (70%), Positives = 40/47 (85%)
 Frame = -3

Query: 408 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 268
           GK+IKNNAST+YDLS+KSI P+GGF HYGEV NDF+M +G + GT K
Sbjct: 1   GKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKK 47



 Score = 46.8 bits (106), Expect = 6e-04
 Identities = 21/29 (72%), Positives = 24/29 (82%)
 Frame = -1

Query: 293 KGCCMGPKKRIITLRKSLRVHTKRAALEK 207
           KGC +G KKR++TLRKSL V TKR ALEK
Sbjct: 39  KGCVVGTKKRVLTLRKSLLVQTKRRALEK 67


>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
           marine group II euryarchaeote DeepAnt-JyKC7|Rep:
           Ribosomal protein L3 - uncultured marine group II
           euryarchaeote DeepAnt-JyKC7
          Length = 358

 Score = 75.4 bits (177), Expect = 2e-12
 Identities = 46/147 (31%), Positives = 68/147 (46%)
 Frame = -3

Query: 717 KVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVA 538
           K++W  E L   I +D V+   + +D +             R+  K L  K  K  R++ 
Sbjct: 197 KLEWAHERLGGEIGIDDVYEAGKELDVVGITKGKGWQGVIKRFGVKLLSHKNSKRRRQIG 256

Query: 537 CIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEK 358
            +G +    V  T+ +AGQ GYH RTE+NK+I RI                    +  E 
Sbjct: 257 NMGDFGTGYVRKTIRQAGQMGYHKRTELNKRILRIS-------------------NPGES 297

Query: 357 SITPMGGFPHYGEVNNDFVMXQGLLHG 277
            +TP GGF HYGEV N +++ +G L G
Sbjct: 298 DVTPAGGFLHYGEVTNPYMVLEGSLPG 324


>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
           marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
           protein L3 - uncultured marine group II euryarchaeote
           HF70_59C08
          Length = 338

 Score = 73.7 bits (173), Expect = 5e-12
 Identities = 50/147 (34%), Positives = 67/147 (45%)
 Frame = -3

Query: 717 KVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVA 538
           ++ W  E L + + ++ VF     ID I             R+  K L  K  K  R++ 
Sbjct: 177 QLDWAAEKLGEELGIEDVFESGSDIDVIGVTKGYGNQGVVRRFGVKLLSHKNSKRRRQIG 236

Query: 537 CIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEK 358
            +G +    V  T+ +AGQ GYH RTE NK+I RI               A  E    E 
Sbjct: 237 NMGDFGTGYVRKTIRQAGQTGYHQRTEYNKRILRI---------------AGEE----ES 277

Query: 357 SITPMGGFPHYGEVNNDFVMXQGLLHG 277
            ITP GGF HYGEV N +++ QG L G
Sbjct: 278 QITPAGGFLHYGEVKNHYMIIQGSLPG 304


>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
           Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
           - Candidatus Nitrosopumilus maritimus SCM1
          Length = 331

 Score = 72.9 bits (171), Expect = 8e-12
 Identities = 45/142 (31%), Positives = 67/142 (47%)
 Frame = -3

Query: 702 REHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAW 523
           +E L K I +D +F     +D               RW+ KK   K+ K +R+V  +G  
Sbjct: 178 KELLGKEIKIDQIFETGASVDVAAITKGKGWQGVLKRWNVKKKQHKSRKTVREVGSLGPI 237

Query: 522 HPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPM 343
            P  V +TV RAGQ G+H R E +K+I  +G               +T+ D  +  I P 
Sbjct: 238 SPQSVMYTVPRAGQFGFHQRVEYDKRIMIMG---------------NTDDD--KLKINPD 280

Query: 342 GGFPHYGEVNNDFVMXQGLLHG 277
           GGF H+G V  DF++ +G + G
Sbjct: 281 GGFKHFGLVKGDFIVLKGSVPG 302


>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
           Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
           Nanoarchaeum equitans
          Length = 321

 Score = 72.5 bits (170), Expect = 1e-11
 Identities = 38/118 (32%), Positives = 59/118 (50%)
 Frame = -3

Query: 753 YXIQXXGVPSRXKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKL 574
           + I   G     K+++    L K + ++ VF + + +D I             R+H  + 
Sbjct: 153 FDIPIGGSDVNKKLEYALSLLGKELSINDVFKEGQYVDVIAVTKGKGFQGVIKRFHVHRR 212

Query: 573 PRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKV 400
             K+ KG+RKV  IG+  P R+  TV   GQ GYH RTE NK I +IG+ ++ + G V
Sbjct: 213 QHKSEKGVRKVGAIGSRGPGRIFPTVPMPGQMGYHRRTEYNKLIIKIGEPLNVEGGWV 270


>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
           Euryarchaeota|Rep: 50S ribosomal protein L3P -
           Methanopyrus kandleri
          Length = 361

 Score = 72.1 bits (169), Expect = 1e-11
 Identities = 51/155 (32%), Positives = 70/155 (45%), Gaps = 2/155 (1%)
 Frame = -3

Query: 735 GVPSRXKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHK 556
           G   R + ++  E L + I    VF + E++D               RW      RKT +
Sbjct: 172 GKDVRERFEYAVEILSEEIRAKDVFDEGEIVDVSAITKGKGFQGVVKRWGVTIQDRKTQR 231

Query: 555 GL--RKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNAS 382
               R +  IG   PSRV +TV  AGQ GYH RTE NK+I +IG+     DG        
Sbjct: 232 KQKGRHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIGE-----DG-------- 278

Query: 381 TEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 277
                  + +TP GGF +YG V  D++M  G + G
Sbjct: 279 -------EEVTPRGGFVNYGVVRGDYIMIHGTVPG 306


>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
           Euryarchaeota|Rep: 50S ribosomal protein L3P -
           Uncultured methanogenic archaeon RC-I
          Length = 337

 Score = 70.9 bits (166), Expect = 3e-11
 Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 2/149 (1%)
 Frame = -3

Query: 717 KVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRK-- 544
           + ++ +  + K + +  VFA  E++D               RW      RK  +  +K  
Sbjct: 175 RFEFAKSLMGKAVGIKDVFAPGELVDVSAITKGYGTQGPVVRWGIATQKRKHARTGKKRH 234

Query: 543 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLS 364
           V  +G W+P R+ + V + GQ GYH RTE NK+I ++G                   D +
Sbjct: 235 VGNLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRILKMG-------------------DKA 275

Query: 363 EKSITPMGGFPHYGEVNNDFVMXQGLLHG 277
           E+ ITP GGF HYG + ND++M +G + G
Sbjct: 276 EE-ITPAGGFLHYGLIRNDYIMLKGSIPG 303


>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
           Thermoplasmatales|Rep: 50S ribosomal protein L3P -
           Thermoplasma volcanium
          Length = 331

 Score = 66.5 bits (155), Expect = 7e-10
 Identities = 44/149 (29%), Positives = 64/149 (42%)
 Frame = -3

Query: 723 RXKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRK 544
           + + ++   HL K I  +      + +D +             R+  K LPRK  K  R 
Sbjct: 166 KERFEYATAHLGKTIRFEDFSKPGKFVDVLSVTKGKGFTGHVQRFGVKLLPRKNRKHRRM 225

Query: 543 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLS 364
           +  +G WHP  V  TV +AGQ GY  RT  N ++ +  +G           +A T     
Sbjct: 226 IGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVRVLKYSKG----------EDADT----- 270

Query: 363 EKSITPMGGFPHYGEVNNDFVMXQGLLHG 277
              I   GGF HYG V ND+V+  G + G
Sbjct: 271 ---INVRGGFLHYGLVKNDYVLLFGSVPG 296


>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
           pendens Hrk 5|Rep: 50S ribosomal protein L3 -
           Thermofilum pendens (strain Hrk 5)
          Length = 334

 Score = 65.3 bits (152), Expect = 2e-09
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 2/158 (1%)
 Frame = -3

Query: 735 GVPSRXKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPR--KT 562
           G P    +    E L K + +  VF + + ID I             R+  +++PR  K 
Sbjct: 164 GGPPEKALSLALEKLGKDLTISDVFKEGDYIDVIAVTKGKGFQGSVKRFGVEEMPRWHKH 223

Query: 561 HKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNAS 382
            KG  ++  +G   P+ + F     GQ G+H RTE NK+I ++G      D +       
Sbjct: 224 RKGHSRIGSVGPQKPA-IMFYTPFPGQLGFHQRTEYNKRILKVG------DAE------- 269

Query: 381 TEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 268
                S K I P GG+PHYG V + F++ +G + G  K
Sbjct: 270 -----SLKEINPPGGWPHYGLVRSQFIIVEGSVPGAVK 302


>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
           Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
           pernix
          Length = 344

 Score = 65.3 bits (152), Expect = 2e-09
 Identities = 56/173 (32%), Positives = 77/173 (44%), Gaps = 4/173 (2%)
 Frame = -3

Query: 774 SDKRXSHYXIQXXGVPSRXKV-KWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXT 598
           S K+     I+  GV    K+  + ++ L   I V+ VF + +++D I            
Sbjct: 159 SKKKPDLLEIKVGGVSDVTKLFDYAKDVLGNLIAVNDVFEEGQLVDVIAVTKGKGFQGVI 218

Query: 597 SRWHTKKLPR--KTHKGLRKVACIGAWHPSRVSF-TVARAGQKGYHHRTEMNKKIYRIGQ 427
            RW  K+LPR  K  KG R+   IGA    R +F    +AGQ G+H RTE NK+I  I  
Sbjct: 219 KRWGVKELPRWHKHRKGSRR---IGARSHGRSTFWETPQAGQTGFHRRTEYNKRILMIDD 275

Query: 426 GIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 268
             +K                    +TP GGF  YG V + FVM  G + GT K
Sbjct: 276 DGYK--------------------VTPAGGFLRYGVVRSTFVMLSGSIPGTPK 308


>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
           symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
           symbiosum
          Length = 328

 Score = 62.5 bits (145), Expect = 1e-08
 Identities = 41/165 (24%), Positives = 69/165 (41%)
 Frame = -3

Query: 768 KRXSHYXIQXXGVPSRXKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRW 589
           KR   +     G   + +  + ++ L K +    V      +D               R 
Sbjct: 154 KRPYIFEAPVRGGSMKERFAYLKDLLGKTVKASDVLEPGAGVDVAAITKGKGWQGVIQRM 213

Query: 588 HTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKD 409
             K+   K+ K +R++  +G   P  V +TV RAGQ G+H R E NK+I  +G       
Sbjct: 214 GAKRKQHKSRKTVRELGSLGPISPQNVMYTVPRAGQMGFHQRIEYNKRIMAVGSA----- 268

Query: 408 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT 274
           G+             + +I P GG+ H+G V  D+++ +G + GT
Sbjct: 269 GE-------------DDAINPSGGYKHFGMVKGDYIVLKGSVPGT 300


>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
           Euryarchaeota|Rep: 50S ribosomal protein L3P -
           Halobacterium salinarium (Halobacterium halobium)
          Length = 335

 Score = 62.1 bits (144), Expect = 2e-08
 Identities = 42/132 (31%), Positives = 58/132 (43%), Gaps = 2/132 (1%)
 Frame = -3

Query: 666 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVSFTVA 493
           VF   E  D               RW  +K   K   +G R+ +  +G W+PSRV  TV 
Sbjct: 191 VFRAGEFTDAAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVP 250

Query: 492 RAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVN 313
           + GQ GYH RTE+NK++  I  G                        TP GGFP+YGEV+
Sbjct: 251 QQGQTGYHQRTELNKRLIDINDG---------------------DEPTPDGGFPNYGEVD 289

Query: 312 NDFVMXQGLLHG 277
             + + +G + G
Sbjct: 290 GPYTLVKGSVPG 301


>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
           Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
           solfataricus
          Length = 351

 Score = 58.8 bits (136), Expect = 1e-07
 Identities = 48/162 (29%), Positives = 70/162 (43%), Gaps = 2/162 (1%)
 Frame = -3

Query: 747 IQXXGVPSRXKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPR 568
           IQ  G   + ++ +    L K I +  VF + ++ID +             R+   +LPR
Sbjct: 181 IQIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPR 240

Query: 567 --KTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 394
             K  KG RK+   G       S+T  + GQ G+H RTE NK+I +IG            
Sbjct: 241 WHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD----------- 287

Query: 393 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 268
                      K I P GGF  YG V N +V+ +G + G+ K
Sbjct: 288 ---------EPKEINPAGGFVRYGIVRNTYVLLEGSILGSKK 320


>UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1;
           Candida albicans|Rep: Putative uncharacterized protein -
           Candida albicans (Yeast)
          Length = 173

 Score = 57.6 bits (133), Expect = 3e-07
 Identities = 27/84 (32%), Positives = 46/84 (54%)
 Frame = +1

Query: 466 VMITFLTSTSYSERHPRRMPSSNAGNFPKXXXXXXXXXXXXPTRSDTFVSFALGDTNAVN 645
           +++T LTS+     +   MPS+N  N  +            P+  DT  +   GD+N +N
Sbjct: 1   MVVTVLTSSGNGPVNVSWMPSTNTSNLSQTSVGLSWQFLGTPSVGDTLETVTFGDSNDIN 60

Query: 646 HFILGKHRIDRDRFLQMFSGPFHF 717
           HFIL ++R++R+ F ++F GP +F
Sbjct: 61  HFILFENRVNRNFFFKVFFGPVNF 84


>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
           Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
           - Staphylothermus marinus (strain ATCC 43588 / DSM 3639
           / F1)
          Length = 395

 Score = 53.2 bits (122), Expect = 7e-06
 Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 3/167 (1%)
 Frame = -3

Query: 768 KRXSHYXIQXXGVPSRXKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRW 589
           K+     I+  G     ++ +  + L   + VD VF + + ID I             R+
Sbjct: 216 KKPEIIEIKIGGGTLSERIDYAEKLLGNYVTVDQVFREGQFIDIIGVTKGKGFQGVIKRF 275

Query: 588 HTKKLPR--KTHKGLRKVACIGAWHPSRVSFT-VARAGQKGYHHRTEMNKKIYRIGQGIH 418
             K+LPR  K  KG RK   IG+  P   + +   + GQ G+H RTE NK+I +IG    
Sbjct: 276 GVKELPRWHKHRKGSRK---IGSRSPGFGTMSETPQPGQMGFHRRTEYNKRIIKIG---- 328

Query: 417 KKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 277
                           ++   +TP GGF  YG V   ++M  G + G
Sbjct: 329 ----------------INGWEVTPKGGFLGYGIVYGPYIMLHGSIIG 359


>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
           Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
           L3P - Ignicoccus hospitalis KIN4/I
          Length = 358

 Score = 43.6 bits (98), Expect = 0.006
 Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 2/148 (1%)
 Frame = -3

Query: 714 VKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPR--KTHKGLRKV 541
           +++ +  L + + V+ V    + +D I             R+  K+LP+  K  KG R+V
Sbjct: 197 LEYAKGKLGQLVDVEEVIEAGKFVDVIGVTKGKGFQGVIKRFGVKELPKWHKHRKGSRRV 256

Query: 540 ACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSE 361
               +W     S+ V + GQ GYH RT+ NK++  I     K                  
Sbjct: 257 GA-RSWGKGTSSY-VPQPGQMGYHRRTDYNKRVLMISDDPSK------------------ 296

Query: 360 KSITPMGGFPHYGEVNNDFVMXQGLLHG 277
             I   GG+ HYG V + +V+ +G + G
Sbjct: 297 --INVEGGWLHYGLVKSKYVVLKGSVFG 322


>UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-12
           - Homo sapiens (Human)
          Length = 103

 Score = 35.5 bits (78), Expect = 1.5
 Identities = 19/41 (46%), Positives = 22/41 (53%)
 Frame = -2

Query: 241 CVCIQRGLH*KRSTSNSLTPRPSSVMVDSRRRLTRLHSWVH 119
           C C + G   +R T +SLTP PS  M  SR    R HSW H
Sbjct: 63  CWCRRSGGLWRRLTLSSLTPPPSLAMAASRPWRRRKHSWDH 103


>UniRef50_Q2BFU2 Cluster: RTX toxins and related Ca2+-binding
           protein; n=2; Bacillus sp. NRRL B-14911|Rep: RTX toxins
           and related Ca2+-binding protein - Bacillus sp. NRRL
           B-14911
          Length = 1415

 Score = 34.7 bits (76), Expect = 2.6
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 408 GKVIKNNASTEYD-LSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 277
           G VI+ N     D LS K++T MG      EV NDF M   ++HG
Sbjct: 299 GAVIEGNVKVSGDFLSLKNLTIMGDLEIAKEVENDFYMEDAIVHG 343


>UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 1482

 Score = 33.5 bits (73), Expect = 6.0
 Identities = 19/67 (28%), Positives = 35/67 (52%)
 Frame = +1

Query: 292 LXHHKVVVYFTIMGETSHRCNGFLRQIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVM 471
           L  H ++ YF  +  +SH       +II  + +++NNFA +F+  L    D  V+F+ + 
Sbjct: 463 LFFHSLIQYFVYLNNSSHILINHKDKIIFIKHLLYNNFAQMFLKYL---CDNYVYFTPIN 519

Query: 472 ITFLTST 492
           I  + S+
Sbjct: 520 ILSIYSS 526


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 755,147,857
Number of Sequences: 1657284
Number of extensions: 15098801
Number of successful extensions: 35019
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 33958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34999
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65438977305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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