BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_T7_I02 (776 letters) Database: uniref50 1,657,284 sequences; 575,637,011 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 234 2e-60 UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 233 5e-60 UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 180 5e-44 UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 164 3e-39 UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 130 3e-29 UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 129 9e-29 UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 117 4e-25 UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 113 6e-24 UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S riboso... 85 2e-15 UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 81 4e-14 UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep: ... 77 7e-13 UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 75 2e-12 UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 74 5e-12 UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 73 8e-12 UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 73 1e-11 UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 72 1e-11 UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 71 3e-11 UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 66 7e-10 UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 65 2e-09 UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 65 2e-09 UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 62 1e-08 UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 62 2e-08 UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 59 1e-07 UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 58 3e-07 UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 53 7e-06 UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 44 0.006 UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-... 36 1.5 UniRef50_Q2BFU2 Cluster: RTX toxins and related Ca2+-binding pro... 35 2.6 UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1; ... 33 6.0 >UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens (Human) Length = 403 Score = 234 bits (573), Expect = 2e-60 Identities = 109/160 (68%), Positives = 125/160 (78%) Frame = -3 Query: 747 IQXXGVPSRXKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPR 568 IQ G K+ W RE LE+ +PV+ VF QDEMID I TSRWHTKKLPR Sbjct: 183 IQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPR 242 Query: 567 KTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 388 KTH+GLRKVACIGAWHP+RV+F+VARAGQKGYHHRTE+NKKIY+IGQG KDGK+IKNN Sbjct: 243 KTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNN 302 Query: 387 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 268 AST+YDLS+KSI P+GGF HYGEV NDFVM +G + GT K Sbjct: 303 ASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKK 342 Score = 106 bits (255), Expect = 5e-22 Identities = 50/67 (74%), Positives = 57/67 (85%) Frame = -1 Query: 293 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 114 KGC +G KKR++TLRKSL V TKR ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LK Sbjct: 334 KGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393 Query: 113 KDRIREE 93 KDRI +E Sbjct: 394 KDRIAKE 400 >UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bilateria|Rep: 60S ribosomal protein L3-like - Homo sapiens (Human) Length = 407 Score = 233 bits (569), Expect = 5e-60 Identities = 106/160 (66%), Positives = 124/160 (77%) Frame = -3 Query: 747 IQXXGVPSRXKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPR 568 IQ G KV W + LEK +PV SVF+Q E+ID I TSRWHTKKLPR Sbjct: 183 IQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPR 242 Query: 567 KTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 388 KTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE+NKKI+RIG+G H +DGK++KNN Sbjct: 243 KTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHMEDGKLVKNN 302 Query: 387 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 268 AST YD++ KSITP+GGFPHYGEVNNDFVM +G + GT K Sbjct: 303 ASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKK 342 Score = 91.9 bits (218), Expect = 2e-17 Identities = 44/66 (66%), Positives = 49/66 (74%) Frame = -1 Query: 293 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 114 KGC G KKR+ITLRKSL VH R A+E I LKFIDT+SKFGHGRFQT +K AFMG K Sbjct: 334 KGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393 Query: 113 KDRIRE 96 K +E Sbjct: 394 KHLEKE 399 >UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3; n=1; Caenorhabditis elegans|Rep: Putative uncharacterized protein rpl-3 - Caenorhabditis elegans Length = 353 Score = 180 bits (437), Expect = 5e-44 Identities = 84/130 (64%), Positives = 99/130 (76%) Frame = -3 Query: 666 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARA 487 V A +MID I TSRWHTKKLPRKTHKGLRKVACIGAWHPSRV+FTVARA Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARA 221 Query: 486 GQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNND 307 GQKG+HHRT +N KIYRIG+ ++G KNN STE+DL++K+ITPMGGFP YG VN D Sbjct: 222 GQKGFHHRTIINNKIYRIGKSALTEEG---KNNGSTEFDLTQKTITPMGGFPRYGIVNQD 278 Query: 306 FVMXQGLLHG 277 ++M +G + G Sbjct: 279 YIMLRGAVLG 288 Score = 96.3 bits (229), Expect = 8e-19 Identities = 46/66 (69%), Positives = 53/66 (80%) Frame = -1 Query: 293 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 114 +G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A+K AFMG LK Sbjct: 283 RGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 342 Query: 113 KDRIRE 96 +D + E Sbjct: 343 RDFLAE 348 >UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Trypanosomatidae|Rep: Ribosomal protein L3, putative - Trypanosoma brucei Length = 480 Score = 164 bits (398), Expect = 3e-39 Identities = 80/157 (50%), Positives = 99/157 (63%) Frame = -3 Query: 747 IQXXGVPSRXKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPR 568 IQ G K++ + LEK + +DSVF Q E D RW LPR Sbjct: 237 IQINGGTIAQKIELAKSLLEKEVRIDSVFQQSEACDVCAVTKGHGFTGVVKRWGVACLPR 296 Query: 567 KTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 388 KTH+GLRKVACIGAWHPSRV +TVARAGQ GYHHRT +NKKIY++G+ + + N Sbjct: 297 KTHRGLRKVACIGAWHPSRVMYTVARAGQHGYHHRTHLNKKIYQLGRAVSME-----PNQ 351 Query: 387 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 277 A+T YDL+ K+ITPMGGF YG V ND+VM +G + G Sbjct: 352 ATTAYDLTAKTITPMGGFVGYGTVRNDYVMLKGSVAG 388 Score = 86.6 bits (205), Expect = 6e-16 Identities = 40/67 (59%), Positives = 48/67 (71%) Frame = -1 Query: 293 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 114 KG GP++R+ITLR+ + T R EKI LKFIDTSSK GHGRFQT +K+ + G LK Sbjct: 383 KGSVAGPRRRVITLRRPMAPQTSRKLTEKITLKFIDTSSKIGHGRFQTKKEKSQWYGPLK 442 Query: 113 KDRIREE 93 KDRIR E Sbjct: 443 KDRIRRE 449 >UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella natans|Rep: Ribosomal protein L3 - Bigelowiella natans (Pedinomonas minutissima) (Chlorarachnion sp.(strain CCMP 621)) Length = 370 Score = 130 bits (315), Expect = 3e-29 Identities = 67/167 (40%), Positives = 101/167 (60%) Frame = -3 Query: 768 KRXSHYXIQXXGVPSRXKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRW 589 K+ + G + K+++ + K I ++S+F ++++ID I SRW Sbjct: 158 KKKYFFETDIIGGSPKMKLEFWLKLNNKKIYINSIFHENDIIDAIGITKGHGTKGVVSRW 217 Query: 588 HTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKD 409 +LPRKTH+GLRKVACIG W PSRV++T++RAGQKGYH RT NKKIY+IG +++ Sbjct: 218 GITRLPRKTHRGLRKVACIGPWTPSRVAWTISRAGQKGYHKRTLFNKKIYKIGS---EEN 274 Query: 408 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 268 N+ S D KS+ MGGF +G +NND+++ +G + G+ K Sbjct: 275 FSYYSNSLS---DSIVKSVNCMGGFKKFGFINNDYLIIKGSMTGSSK 318 Score = 55.2 bits (127), Expect = 2e-06 Identities = 27/56 (48%), Positives = 36/56 (64%) Frame = -1 Query: 293 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFM 126 KG G KR I LRK+++ EKI LK++DTSSK GHGR+++ ADK + M Sbjct: 310 KGSMTGSSKRPILLRKNIKNKISSVITEKIILKYVDTSSKRGHGRYESSADKFSKM 365 >UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2; Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry - Rattus norvegicus Length = 380 Score = 129 bits (311), Expect = 9e-29 Identities = 65/123 (52%), Positives = 82/123 (66%) Frame = -3 Query: 657 QDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQK 478 QDE+ID I T + P + +G K+ C+GAWHP+RV+F+VA+ GQK Sbjct: 193 QDEIIDVIKETKGNGYKGVTRVDIQRNCPERPIEGCPKL-CVGAWHPARVTFSVAQVGQK 251 Query: 477 GYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVM 298 GYHH + NKKI +IGQG KDGK+IKNNA TEY LS+KSI +GGF HYGEV NDF+ Sbjct: 252 GYHHNGD-NKKICKIGQGYLIKDGKLIKNNAPTEYHLSDKSINLLGGFVHYGEVTNDFIR 310 Query: 297 XQG 289 +G Sbjct: 311 LKG 313 Score = 58.4 bits (135), Expect = 2e-07 Identities = 33/67 (49%), Positives = 42/67 (62%) Frame = -1 Query: 293 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 114 KGC + KK + T+ K L V T + AL+KI+ K DT+ K GHG FQT K AF+G LK Sbjct: 312 KGCAVRTKKHL-TICKYLLVQTIQWALKKIDPKLNDTTYKVGHGCFQTTEGKRAFIGPLK 370 Query: 113 KDRIREE 93 K+ EE Sbjct: 371 KECTAEE 377 >UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep: 60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein B) (TARBP-B). - Bos Taurus Length = 340 Score = 117 bits (281), Expect = 4e-25 Identities = 68/150 (45%), Positives = 90/150 (60%) Frame = -3 Query: 717 KVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVA 538 K+ W + LE+ +PV+ +F + I +S W+TKK+P KTH+ + A Sbjct: 149 KLDWAHKKLEQQVPVNHIFRVRRLF-VIGTTKGKHYKGISSHWYTKKVPWKTHQEFHEAA 207 Query: 537 CIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEK 358 CI W +VA A QKG HH T +NKKIY+IGQG K+GK+IKNNAST+Y K Sbjct: 208 CI--WD----GLSVAWARQKGCHHCT-INKKIYKIGQGYLIKNGKIIKNNASTDY---TK 257 Query: 357 SITPMGGFPHYGEVNNDFVMXQGLLHGT*K 268 SI+P+GG H G+V NDFVM + L GT K Sbjct: 258 SISPLGGCIHCGKVTNDFVMLKDCLVGTKK 287 Score = 81.0 bits (191), Expect = 3e-14 Identities = 36/62 (58%), Positives = 46/62 (74%) Frame = -1 Query: 293 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 114 K C +G KKR+++L KSL + TK+ L+K+N KFIDT+SKFGHG FQ +K FMG LK Sbjct: 279 KDCLVGTKKRVLSLCKSLLMRTKQQTLQKVNFKFIDTTSKFGHGCFQIVGEKKGFMGPLK 338 Query: 113 KD 108 KD Sbjct: 339 KD 340 >UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermococcaceae|Rep: 50S ribosomal protein L3P - Pyrococcus furiosus Length = 365 Score = 113 bits (271), Expect = 6e-24 Identities = 63/156 (40%), Positives = 84/156 (53%) Frame = -3 Query: 735 GVPSRXKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHK 556 G K + +E L K + V V + E++D I RW K K K Sbjct: 189 GTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSK 248 Query: 555 GLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTE 376 G RKV IG WHP+RV +TV AGQ G+HHRTE+NK++ IG+ +GK +K + +TE Sbjct: 249 GRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE-----NGK-LKLDENTE 302 Query: 375 YDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 268 + ITP GGFPHYG V +DF+M G + G K Sbjct: 303 IE-----ITPKGGFPHYGIVRSDFMMIAGSVPGAIK 333 >UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S ribosomal protein L3 (L4); n=1; Macaca mulatta|Rep: PREDICTED: similar to 60S ribosomal protein L3 (L4) - Macaca mulatta Length = 153 Score = 85.0 bits (201), Expect = 2e-15 Identities = 41/63 (65%), Positives = 50/63 (79%) Frame = -1 Query: 281 MGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRI 102 +G KK+++TL KS V TK ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LKKD+ Sbjct: 88 VGTKKQVLTLCKSSLVQTKWRALEKIDLKFIDTTSKFGHGRFQTIGEKKAFMGPLKKDQT 147 Query: 101 REE 93 +E Sbjct: 148 AKE 150 >UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarchaeota|Rep: 50S ribosomal protein L3P - Methanococcus jannaschii Length = 335 Score = 80.6 bits (190), Expect = 4e-14 Identities = 52/166 (31%), Positives = 76/166 (45%), Gaps = 2/166 (1%) Frame = -3 Query: 768 KRXSHYXIQXXGVPSRXKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRW 589 K+ I+ G ++ + +E L K + + VF + E++D I RW Sbjct: 155 KKPEILEIRIGGKDIEERLNYAKEILGKQLNITDVFQEGELVDTIGVTKGKGFQGQVKRW 214 Query: 588 HTK-KLPRKTHKGL-RKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 415 K + + KG+ R V IG W P V ++V GQ GYH RTE NK+I +IG Sbjct: 215 GVKIQFGKHARKGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIG----- 269 Query: 414 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 277 NN ITP GGF HYG + N++V+ +G + G Sbjct: 270 -------NNGD--------EITPKGGFLHYGVIRNNYVVLKGSVQG 300 >UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep: Ribosomal protein L3 - Mus musculus (Mouse) Length = 67 Score = 76.6 bits (180), Expect = 7e-13 Identities = 33/47 (70%), Positives = 40/47 (85%) Frame = -3 Query: 408 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 268 GK+IKNNAST+YDLS+KSI P+GGF HYGEV NDF+M +G + GT K Sbjct: 1 GKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKK 47 Score = 46.8 bits (106), Expect = 6e-04 Identities = 21/29 (72%), Positives = 24/29 (82%) Frame = -1 Query: 293 KGCCMGPKKRIITLRKSLRVHTKRAALEK 207 KGC +G KKR++TLRKSL V TKR ALEK Sbjct: 39 KGCVVGTKKRVLTLRKSLLVQTKRRALEK 67 >UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured marine group II euryarchaeote DeepAnt-JyKC7|Rep: Ribosomal protein L3 - uncultured marine group II euryarchaeote DeepAnt-JyKC7 Length = 358 Score = 75.4 bits (177), Expect = 2e-12 Identities = 46/147 (31%), Positives = 68/147 (46%) Frame = -3 Query: 717 KVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVA 538 K++W E L I +D V+ + +D + R+ K L K K R++ Sbjct: 197 KLEWAHERLGGEIGIDDVYEAGKELDVVGITKGKGWQGVIKRFGVKLLSHKNSKRRRQIG 256 Query: 537 CIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEK 358 +G + V T+ +AGQ GYH RTE+NK+I RI + E Sbjct: 257 NMGDFGTGYVRKTIRQAGQMGYHKRTELNKRILRIS-------------------NPGES 297 Query: 357 SITPMGGFPHYGEVNNDFVMXQGLLHG 277 +TP GGF HYGEV N +++ +G L G Sbjct: 298 DVTPAGGFLHYGEVTNPYMVLEGSLPG 324 >UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured marine group II euryarchaeote HF70_59C08|Rep: Ribosomal protein L3 - uncultured marine group II euryarchaeote HF70_59C08 Length = 338 Score = 73.7 bits (173), Expect = 5e-12 Identities = 50/147 (34%), Positives = 67/147 (45%) Frame = -3 Query: 717 KVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVA 538 ++ W E L + + ++ VF ID I R+ K L K K R++ Sbjct: 177 QLDWAAEKLGEELGIEDVFESGSDIDVIGVTKGYGNQGVVRRFGVKLLSHKNSKRRRQIG 236 Query: 537 CIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEK 358 +G + V T+ +AGQ GYH RTE NK+I RI A E E Sbjct: 237 NMGDFGTGYVRKTIRQAGQTGYHQRTEYNKRILRI---------------AGEE----ES 277 Query: 357 SITPMGGFPHYGEVNNDFVMXQGLLHG 277 ITP GGF HYGEV N +++ QG L G Sbjct: 278 QITPAGGFLHYGEVKNHYMIIQGSLPG 304 >UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3 - Candidatus Nitrosopumilus maritimus SCM1 Length = 331 Score = 72.9 bits (171), Expect = 8e-12 Identities = 45/142 (31%), Positives = 67/142 (47%) Frame = -3 Query: 702 REHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAW 523 +E L K I +D +F +D RW+ KK K+ K +R+V +G Sbjct: 178 KELLGKEIKIDQIFETGASVDVAAITKGKGWQGVLKRWNVKKKQHKSRKTVREVGSLGPI 237 Query: 522 HPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPM 343 P V +TV RAGQ G+H R E +K+I +G +T+ D + I P Sbjct: 238 SPQSVMYTVPRAGQFGFHQRVEYDKRIMIMG---------------NTDDD--KLKINPD 280 Query: 342 GGFPHYGEVNNDFVMXQGLLHG 277 GGF H+G V DF++ +G + G Sbjct: 281 GGFKHFGLVKGDFIVLKGSVPG 302 >UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P - Nanoarchaeum equitans Length = 321 Score = 72.5 bits (170), Expect = 1e-11 Identities = 38/118 (32%), Positives = 59/118 (50%) Frame = -3 Query: 753 YXIQXXGVPSRXKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKL 574 + I G K+++ L K + ++ VF + + +D I R+H + Sbjct: 153 FDIPIGGSDVNKKLEYALSLLGKELSINDVFKEGQYVDVIAVTKGKGFQGVIKRFHVHRR 212 Query: 573 PRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKV 400 K+ KG+RKV IG+ P R+ TV GQ GYH RTE NK I +IG+ ++ + G V Sbjct: 213 QHKSEKGVRKVGAIGSRGPGRIFPTVPMPGQMGYHRRTEYNKLIIKIGEPLNVEGGWV 270 >UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryarchaeota|Rep: 50S ribosomal protein L3P - Methanopyrus kandleri Length = 361 Score = 72.1 bits (169), Expect = 1e-11 Identities = 51/155 (32%), Positives = 70/155 (45%), Gaps = 2/155 (1%) Frame = -3 Query: 735 GVPSRXKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHK 556 G R + ++ E L + I VF + E++D RW RKT + Sbjct: 172 GKDVRERFEYAVEILSEEIRAKDVFDEGEIVDVSAITKGKGFQGVVKRWGVTIQDRKTQR 231 Query: 555 GL--RKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNAS 382 R + IG PSRV +TV AGQ GYH RTE NK+I +IG+ DG Sbjct: 232 KQKGRHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIGE-----DG-------- 278 Query: 381 TEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 277 + +TP GGF +YG V D++M G + G Sbjct: 279 -------EEVTPRGGFVNYGVVRGDYIMIHGTVPG 306 >UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarchaeota|Rep: 50S ribosomal protein L3P - Uncultured methanogenic archaeon RC-I Length = 337 Score = 70.9 bits (166), Expect = 3e-11 Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 2/149 (1%) Frame = -3 Query: 717 KVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRK-- 544 + ++ + + K + + VFA E++D RW RK + +K Sbjct: 175 RFEFAKSLMGKAVGIKDVFAPGELVDVSAITKGYGTQGPVVRWGIATQKRKHARTGKKRH 234 Query: 543 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLS 364 V +G W+P R+ + V + GQ GYH RTE NK+I ++G D + Sbjct: 235 VGNLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRILKMG-------------------DKA 275 Query: 363 EKSITPMGGFPHYGEVNNDFVMXQGLLHG 277 E+ ITP GGF HYG + ND++M +G + G Sbjct: 276 EE-ITPAGGFLHYGLIRNDYIMLKGSIPG 303 >UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermoplasmatales|Rep: 50S ribosomal protein L3P - Thermoplasma volcanium Length = 331 Score = 66.5 bits (155), Expect = 7e-10 Identities = 44/149 (29%), Positives = 64/149 (42%) Frame = -3 Query: 723 RXKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRK 544 + + ++ HL K I + + +D + R+ K LPRK K R Sbjct: 166 KERFEYATAHLGKTIRFEDFSKPGKFVDVLSVTKGKGFTGHVQRFGVKLLPRKNRKHRRM 225 Query: 543 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLS 364 + +G WHP V TV +AGQ GY RT N ++ + +G +A T Sbjct: 226 IGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVRVLKYSKG----------EDADT----- 270 Query: 363 EKSITPMGGFPHYGEVNNDFVMXQGLLHG 277 I GGF HYG V ND+V+ G + G Sbjct: 271 ---INVRGGFLHYGLVKNDYVLLFGSVPG 296 >UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum pendens Hrk 5|Rep: 50S ribosomal protein L3 - Thermofilum pendens (strain Hrk 5) Length = 334 Score = 65.3 bits (152), Expect = 2e-09 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 2/158 (1%) Frame = -3 Query: 735 GVPSRXKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPR--KT 562 G P + E L K + + VF + + ID I R+ +++PR K Sbjct: 164 GGPPEKALSLALEKLGKDLTISDVFKEGDYIDVIAVTKGKGFQGSVKRFGVEEMPRWHKH 223 Query: 561 HKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNAS 382 KG ++ +G P+ + F GQ G+H RTE NK+I ++G D + Sbjct: 224 RKGHSRIGSVGPQKPA-IMFYTPFPGQLGFHQRTEYNKRILKVG------DAE------- 269 Query: 381 TEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 268 S K I P GG+PHYG V + F++ +G + G K Sbjct: 270 -----SLKEINPPGGWPHYGLVRSQFIIVEGSVPGAVK 302 >UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum pernix Length = 344 Score = 65.3 bits (152), Expect = 2e-09 Identities = 56/173 (32%), Positives = 77/173 (44%), Gaps = 4/173 (2%) Frame = -3 Query: 774 SDKRXSHYXIQXXGVPSRXKV-KWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXT 598 S K+ I+ GV K+ + ++ L I V+ VF + +++D I Sbjct: 159 SKKKPDLLEIKVGGVSDVTKLFDYAKDVLGNLIAVNDVFEEGQLVDVIAVTKGKGFQGVI 218 Query: 597 SRWHTKKLPR--KTHKGLRKVACIGAWHPSRVSF-TVARAGQKGYHHRTEMNKKIYRIGQ 427 RW K+LPR K KG R+ IGA R +F +AGQ G+H RTE NK+I I Sbjct: 219 KRWGVKELPRWHKHRKGSRR---IGARSHGRSTFWETPQAGQTGFHRRTEYNKRILMIDD 275 Query: 426 GIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 268 +K +TP GGF YG V + FVM G + GT K Sbjct: 276 DGYK--------------------VTPAGGFLRYGVVRSTFVMLSGSIPGTPK 308 >UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum symbiosum Length = 328 Score = 62.5 bits (145), Expect = 1e-08 Identities = 41/165 (24%), Positives = 69/165 (41%) Frame = -3 Query: 768 KRXSHYXIQXXGVPSRXKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRW 589 KR + G + + + ++ L K + V +D R Sbjct: 154 KRPYIFEAPVRGGSMKERFAYLKDLLGKTVKASDVLEPGAGVDVAAITKGKGWQGVIQRM 213 Query: 588 HTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKD 409 K+ K+ K +R++ +G P V +TV RAGQ G+H R E NK+I +G Sbjct: 214 GAKRKQHKSRKTVRELGSLGPISPQNVMYTVPRAGQMGFHQRIEYNKRIMAVGSA----- 268 Query: 408 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT 274 G+ + +I P GG+ H+G V D+++ +G + GT Sbjct: 269 GE-------------DDAINPSGGYKHFGMVKGDYIVLKGSVPGT 300 >UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarchaeota|Rep: 50S ribosomal protein L3P - Halobacterium salinarium (Halobacterium halobium) Length = 335 Score = 62.1 bits (144), Expect = 2e-08 Identities = 42/132 (31%), Positives = 58/132 (43%), Gaps = 2/132 (1%) Frame = -3 Query: 666 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVSFTVA 493 VF E D RW +K K +G R+ + +G W+PSRV TV Sbjct: 191 VFRAGEFTDAAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVP 250 Query: 492 RAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVN 313 + GQ GYH RTE+NK++ I G TP GGFP+YGEV+ Sbjct: 251 QQGQTGYHQRTELNKRLIDINDG---------------------DEPTPDGGFPNYGEVD 289 Query: 312 NDFVMXQGLLHG 277 + + +G + G Sbjct: 290 GPYTLVKGSVPG 301 >UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus solfataricus Length = 351 Score = 58.8 bits (136), Expect = 1e-07 Identities = 48/162 (29%), Positives = 70/162 (43%), Gaps = 2/162 (1%) Frame = -3 Query: 747 IQXXGVPSRXKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPR 568 IQ G + ++ + L K I + VF + ++ID + R+ +LPR Sbjct: 181 IQIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPR 240 Query: 567 --KTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 394 K KG RK+ G S+T + GQ G+H RTE NK+I +IG Sbjct: 241 WHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD----------- 287 Query: 393 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 268 K I P GGF YG V N +V+ +G + G+ K Sbjct: 288 ---------EPKEINPAGGFVRYGIVRNTYVLLEGSILGSKK 320 >UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; Candida albicans|Rep: Putative uncharacterized protein - Candida albicans (Yeast) Length = 173 Score = 57.6 bits (133), Expect = 3e-07 Identities = 27/84 (32%), Positives = 46/84 (54%) Frame = +1 Query: 466 VMITFLTSTSYSERHPRRMPSSNAGNFPKXXXXXXXXXXXXPTRSDTFVSFALGDTNAVN 645 +++T LTS+ + MPS+N N + P+ DT + GD+N +N Sbjct: 1 MVVTVLTSSGNGPVNVSWMPSTNTSNLSQTSVGLSWQFLGTPSVGDTLETVTFGDSNDIN 60 Query: 646 HFILGKHRIDRDRFLQMFSGPFHF 717 HFIL ++R++R+ F ++F GP +F Sbjct: 61 HFILFENRVNRNFFFKVFFGPVNF 84 >UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylothermus marinus F1|Rep: 50S ribosomal protein L3 - Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) Length = 395 Score = 53.2 bits (122), Expect = 7e-06 Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 3/167 (1%) Frame = -3 Query: 768 KRXSHYXIQXXGVPSRXKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRW 589 K+ I+ G ++ + + L + VD VF + + ID I R+ Sbjct: 216 KKPEIIEIKIGGGTLSERIDYAEKLLGNYVTVDQVFREGQFIDIIGVTKGKGFQGVIKRF 275 Query: 588 HTKKLPR--KTHKGLRKVACIGAWHPSRVSFT-VARAGQKGYHHRTEMNKKIYRIGQGIH 418 K+LPR K KG RK IG+ P + + + GQ G+H RTE NK+I +IG Sbjct: 276 GVKELPRWHKHRKGSRK---IGSRSPGFGTMSETPQPGQMGFHRRTEYNKRIIKIG---- 328 Query: 417 KKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 277 ++ +TP GGF YG V ++M G + G Sbjct: 329 ----------------INGWEVTPKGGFLGYGIVYGPYIMLHGSIIG 359 >UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein L3P - Ignicoccus hospitalis KIN4/I Length = 358 Score = 43.6 bits (98), Expect = 0.006 Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 2/148 (1%) Frame = -3 Query: 714 VKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPR--KTHKGLRKV 541 +++ + L + + V+ V + +D I R+ K+LP+ K KG R+V Sbjct: 197 LEYAKGKLGQLVDVEEVIEAGKFVDVIGVTKGKGFQGVIKRFGVKELPKWHKHRKGSRRV 256 Query: 540 ACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSE 361 +W S+ V + GQ GYH RT+ NK++ I K Sbjct: 257 GA-RSWGKGTSSY-VPQPGQMGYHRRTDYNKRVLMISDDPSK------------------ 296 Query: 360 KSITPMGGFPHYGEVNNDFVMXQGLLHG 277 I GG+ HYG V + +V+ +G + G Sbjct: 297 --INVEGGWLHYGLVKSKYVVLKGSVFG 322 >UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-12 - Homo sapiens (Human) Length = 103 Score = 35.5 bits (78), Expect = 1.5 Identities = 19/41 (46%), Positives = 22/41 (53%) Frame = -2 Query: 241 CVCIQRGLH*KRSTSNSLTPRPSSVMVDSRRRLTRLHSWVH 119 C C + G +R T +SLTP PS M SR R HSW H Sbjct: 63 CWCRRSGGLWRRLTLSSLTPPPSLAMAASRPWRRRKHSWDH 103 >UniRef50_Q2BFU2 Cluster: RTX toxins and related Ca2+-binding protein; n=2; Bacillus sp. NRRL B-14911|Rep: RTX toxins and related Ca2+-binding protein - Bacillus sp. NRRL B-14911 Length = 1415 Score = 34.7 bits (76), Expect = 2.6 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = -3 Query: 408 GKVIKNNASTEYD-LSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 277 G VI+ N D LS K++T MG EV NDF M ++HG Sbjct: 299 GAVIEGNVKVSGDFLSLKNLTIMGDLEIAKEVENDFYMEDAIVHG 343 >UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1; Plasmodium falciparum 3D7|Rep: Putative uncharacterized protein - Plasmodium falciparum (isolate 3D7) Length = 1482 Score = 33.5 bits (73), Expect = 6.0 Identities = 19/67 (28%), Positives = 35/67 (52%) Frame = +1 Query: 292 LXHHKVVVYFTIMGETSHRCNGFLRQIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVM 471 L H ++ YF + +SH +II + +++NNFA +F+ L D V+F+ + Sbjct: 463 LFFHSLIQYFVYLNNSSHILINHKDKIIFIKHLLYNNFAQMFLKYL---CDNYVYFTPIN 519 Query: 472 ITFLTST 492 I + S+ Sbjct: 520 ILSIYSS 526 Database: uniref50 Posted date: Oct 5, 2007 11:19 AM Number of letters in database: 575,637,011 Number of sequences in database: 1,657,284 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 755,147,857 Number of Sequences: 1657284 Number of extensions: 15098801 Number of successful extensions: 35019 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 33958 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 34999 length of database: 575,637,011 effective HSP length: 99 effective length of database: 411,565,895 effective search space used: 65438977305 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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