Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_I02
         (776 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi...   179   2e-45
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi...   176   1e-44
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi...   176   1e-44
At3g60400.1 68416.m06755 mitochondrial transcription termination...    29   3.4  
At5g22400.1 68418.m02613 rac GTPase activating protein, putative...    28   7.9  

>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
           to ribosomal protein GI:806279 from [Arabidopsis
           thaliana]
          Length = 390

 Score =  179 bits (435), Expect = 2e-45
 Identities = 87/157 (55%), Positives = 106/157 (67%)
 Frame = -3

Query: 747 IQXXGVPSRXKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPR 568
           IQ  G     KV +     EK +PVD++F +DEMID I            +RW   +LPR
Sbjct: 184 IQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 243

Query: 567 KTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 388
           KTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+YR+G     K G+   ++
Sbjct: 244 KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVG-----KVGQE-THS 297

Query: 387 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 277
           A TEYD +EK ITPMGGFPHYG V  D++M +G   G
Sbjct: 298 AMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVG 334



 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 37/61 (60%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
 Frame = -1

Query: 293 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMG-TL 117
           KGCC+GPKKR++TLR++L   T R A+E+I LKFID +S  GHGRFQT  +KA F G T+
Sbjct: 329 KGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGRTI 388

Query: 116 K 114
           K
Sbjct: 389 K 389


>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  176 bits (429), Expect = 1e-44
 Identities = 87/164 (53%), Positives = 107/164 (65%)
 Frame = -3

Query: 768 KRXSHYXIQXXGVPSRXKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRW 589
           K+     IQ  G     KV +     EK IP+++VF +DEMID I            +RW
Sbjct: 177 KKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRW 236

Query: 588 HTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKD 409
              +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTE+NKKIYR+G     K 
Sbjct: 237 GVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLG-----KV 291

Query: 408 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 277
           G    + A TEYD +EK +TPMGGFPHYG V +D++M +G   G
Sbjct: 292 G-TEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVG 334



 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 38/61 (62%), Positives = 46/61 (75%)
 Frame = -1

Query: 293 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 114
           KGCC+GPKKR++TLR+SL   T R ALE+I LKFIDT+S FGHGRFQT  +K  F   + 
Sbjct: 329 KGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVT 388

Query: 113 K 111
           K
Sbjct: 389 K 389


>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  176 bits (429), Expect = 1e-44
 Identities = 87/164 (53%), Positives = 107/164 (65%)
 Frame = -3

Query: 768 KRXSHYXIQXXGVPSRXKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRW 589
           K+     IQ  G     KV +     EK IP+++VF +DEMID I            +RW
Sbjct: 177 KKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRW 236

Query: 588 HTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKD 409
              +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTE+NKKIYR+G     K 
Sbjct: 237 GVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLG-----KV 291

Query: 408 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 277
           G    + A TEYD +EK +TPMGGFPHYG V +D++M +G   G
Sbjct: 292 G-TEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVG 334



 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 38/61 (62%), Positives = 46/61 (75%)
 Frame = -1

Query: 293 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 114
           KGCC+GPKKR++TLR+SL   T R ALE+I LKFIDT+S FGHGRFQT  +K  F   + 
Sbjct: 329 KGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVT 388

Query: 113 K 111
           K
Sbjct: 389 K 389


>At3g60400.1 68416.m06755 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 558

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -3

Query: 474 YHHRTEMNKKIYRIGQGIHKKDGK--VIKNNASTEYDLSEKSITPMGGFPHYG 322
           Y     MNK  Y    G+ K+D    +++N A   +DL +  I+  G   H+G
Sbjct: 262 YSEEALMNKAGYFCRFGVSKEDAALLILRNPAIMNFDLEKPVISVTGMLKHFG 314


>At5g22400.1 68418.m02613 rac GTPase activating protein, putative
           similar to rac GTPase activating protein 1 [Lotus
           japonicus] GI:3695059; contains Pfam profile PF00620:
           RhoGAP domain
          Length = 466

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -2

Query: 205 STSNSLTPRPSSVMVDSRRRLTRLHSWVHSRR 110
           S+S+S +P PSS+   SR   T L S  H+RR
Sbjct: 17  SSSSSSSPSPSSLSYASRSNATLLISSDHNRR 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,614,775
Number of Sequences: 28952
Number of extensions: 345848
Number of successful extensions: 851
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)