Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_I01
         (774 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54020.2 68414.m06155 myrosinase-associated protein, putative...    31   0.85 
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain...    30   1.5  
At1g68730.1 68414.m07855 zinc finger (DNL type) family protein c...    30   1.5  
At3g53440.2 68416.m05898 expressed protein                             30   2.0  
At3g53440.1 68416.m05897 expressed protein                             30   2.0  
At3g60750.1 68416.m06796 transketolase, putative strong similari...    29   2.6  
At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) conta...    29   3.4  
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela...    29   4.5  

>At1g54020.2 68414.m06155 myrosinase-associated protein, putative
           strong similarity to myrosinase-associated proteins
           GI:1769968, GI:1769970, GI:1216389,GI:1216391 from
           [Brassica napus]; contains InterPro Entry IPR001087
           Lipolytic enzyme, G-D-S-L family
          Length = 372

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 655 LACGSQAFIATLLFDPSMSALPIIAKQNSPSVGLFT 548
           + C S + +  LL  P +  L  I+ QN P+VGLFT
Sbjct: 1   MECSSVSVLGILLVFPLLHNLVTISGQNLPAVGLFT 36


>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein
          Length = 564

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +1

Query: 103 KSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSH 276
           K S +  +PR R  LY D  +  + + K+T S+D+   NG +   S+ E   R+ + H
Sbjct: 142 KESQEVIKPRKRMRLYGDGGAVSSHLHKETSSVDV---NGFQVLPSQAESVKRIFERH 196


>At1g68730.1 68414.m07855 zinc finger (DNL type) family protein
           contains Pfam profile PF05180: DNL zinc finger
          Length = 170

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
 Frame = +1

Query: 16  FYESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTD 195
           FY+      +L+RS+    +   TP+Q  +S + +      ++L PD  S D+    +  
Sbjct: 39  FYKQQNPISALHRSKTTRVIEVVTPKQRNRSFSVFGSLADDSKLNPDEESNDS---AEVA 95

Query: 196 SIDLRDPNGLRRRVSRFECET------RLVKSHCLE 285
           SID++ P   R     F C +      RL+  H  E
Sbjct: 96  SIDIKLPR--RSLQVEFTCNSCGERTKRLINRHAYE 129


>At3g53440.2 68416.m05898 expressed protein
          Length = 512

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = +1

Query: 100 RKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC 279
           RKS+    +P  R+     L++RD++VK + D     +P    RR        RLV S  
Sbjct: 4   RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63

Query: 280 LEPPDSRGSTVSIS 321
               DSR   ++IS
Sbjct: 64  SPIEDSRSKKLNIS 77


>At3g53440.1 68416.m05897 expressed protein
          Length = 512

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = +1

Query: 100 RKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC 279
           RKS+    +P  R+     L++RD++VK + D     +P    RR        RLV S  
Sbjct: 4   RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63

Query: 280 LEPPDSRGSTVSIS 321
               DSR   ++IS
Sbjct: 64  SPIEDSRSKKLNIS 77


>At3g60750.1 68416.m06796 transketolase, putative strong similarity
           to transketolase 1 [Capsicum annuum] GI:3559814;
           contains Pfam profiles PF02779: Transketolase, pyridine
           binding domain, PF02780: Transketolase, C-terminal
           domain, PF00456: Transketolase, thiamine diphosphate
           binding domain
          Length = 741

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/44 (38%), Positives = 19/44 (43%)
 Frame = -2

Query: 500 SFTLLMAFRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGL 369
           + TLL AF         ERN  FG   H +G    G  L S GL
Sbjct: 462 NMTLLKAFGDFQKATPEERNLRFGVREHGMGAICNGIALHSPGL 505


>At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) contains
           Pfam PF02732 : ERCC4 domain; contains TIGRFAM TIGR00596:
           DNA repair protein (rad1); almost identical to 5' repair
           endonuclease (GI:8926611) [Arabidopsis thaliana]
          Length = 956

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
 Frame = +1

Query: 37  GLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDP 216
           G S+ R +H+A + + +  ++   +TD +   +  E + D  S      KK       DP
Sbjct: 492 GSSVGRQEHEALMAAASSIRKLGKTTDMASGNNNPEPHVDKASCTKGKAKK-------DP 544

Query: 217 NGLRRRVSRFECETRLVKSHCLEPPDS--RGSTVSISLPDSA 336
             LRR +     +T   K   L  P++  + +  S S P  A
Sbjct: 545 TSLRRSLRSCNKKTTNSKPEILPGPENEEKANEASTSAPQEA 586


>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
           low similarity to nuclear matrix constituent protein 1
           (NMCP1) [Daucus carota] GI:2190187
          Length = 1042

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/74 (29%), Positives = 36/74 (48%)
 Frame = +1

Query: 94  QERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKS 273
           +E K+S D S+  H  E    + S  A  KK+ +S+  +D    +  +S  E     +++
Sbjct: 95  EEIKASVDESDLTHMREKSAYV-SALAEAKKREESLK-KDVGIAKECISSLEKTLHEMRA 152

Query: 274 HCLEPPDSRGSTVS 315
            C E   S GST+S
Sbjct: 153 ECAETKVSAGSTMS 166


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,594,034
Number of Sequences: 28952
Number of extensions: 349765
Number of successful extensions: 904
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)