Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_H24
         (813 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-l...    52   1e-05

>UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-like
           latent virus|Rep: Coat protein - Bombyx mori Macula-like
           latent virus
          Length = 237

 Score = 52.4 bits (120), Expect = 1e-05
 Identities = 24/40 (60%), Positives = 25/40 (62%)
 Frame = -3

Query: 802 GFAXXXKXTLPXDLGXINXXIKXPIXXTXHPXXNIHFHQS 683
           G A   + TLP DLG IN  IK PI  T HP  NIHFHQS
Sbjct: 165 GLALMHQATLPCDLGYINPIIKSPIPYTNHPRLNIHFHQS 204



 Score = 39.5 bits (88), Expect = 0.099
 Identities = 18/21 (85%), Positives = 18/21 (85%)
 Frame = -2

Query: 647 KXSVVIRGSIRVFHPLVTGHG 585
           K SVVIRGSI V HPLVTGHG
Sbjct: 217 KASVVIRGSISVSHPLVTGHG 237


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 441,402,753
Number of Sequences: 1657284
Number of extensions: 5974758
Number of successful extensions: 8394
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 7990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8389
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 70377768045
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)