Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_H24
         (813 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC107883-1|AAI07884.1|  501|Homo sapiens SF3B1 protein protein.        32   2.8  
BC056155-1|AAH56155.1|  789|Homo sapiens SF3B1 protein protein.        32   2.8  
BC029418-1|AAH29418.1|  501|Homo sapiens SF3B1 protein protein.        32   2.8  
BC015530-1|AAH15530.1|  496|Homo sapiens Unknown (protein for IM...    32   2.8  
AF054284-1|AAC97189.1| 1304|Homo sapiens spliceosomal protein SA...    32   2.8  

>BC107883-1|AAI07884.1|  501|Homo sapiens SF3B1 protein protein.
          Length = 501

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 570 GETPLPMPSDXGVKYPDGPSDNNGGFTPGRTPSXTXXG 683
           GETP P  S    ++ + P+   GG TP  TP  T  G
Sbjct: 324 GETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIG 361


>BC056155-1|AAH56155.1|  789|Homo sapiens SF3B1 protein protein.
          Length = 789

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 570 GETPLPMPSDXGVKYPDGPSDNNGGFTPGRTPSXTXXG 683
           GETP P  S    ++ + P+   GG TP  TP  T  G
Sbjct: 324 GETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIG 361


>BC029418-1|AAH29418.1|  501|Homo sapiens SF3B1 protein protein.
          Length = 501

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 570 GETPLPMPSDXGVKYPDGPSDNNGGFTPGRTPSXTXXG 683
           GETP P  S    ++ + P+   GG TP  TP  T  G
Sbjct: 324 GETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIG 361


>BC015530-1|AAH15530.1|  496|Homo sapiens Unknown (protein for
           IMAGE:3913474) protein.
          Length = 496

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 570 GETPLPMPSDXGVKYPDGPSDNNGGFTPGRTPSXTXXG 683
           GETP P  S    ++ + P+   GG TP  TP  T  G
Sbjct: 324 GETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIG 361


>AF054284-1|AAC97189.1| 1304|Homo sapiens spliceosomal protein SAP
           155 protein.
          Length = 1304

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 570 GETPLPMPSDXGVKYPDGPSDNNGGFTPGRTPSXTXXG 683
           GETP P  S    ++ + P+   GG TP  TP  T  G
Sbjct: 324 GETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIG 361


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,331,961
Number of Sequences: 237096
Number of extensions: 1074103
Number of successful extensions: 1499
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1499
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10092110758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)