Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_H22
(810 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 98 1e-21
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 79 1e-15
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 73 4e-14
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 69 8e-13
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 69 8e-13
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 68 1e-12
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 61 2e-10
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 58 1e-09
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 57 3e-09
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 56 5e-09
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 56 6e-09
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 55 1e-08
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 53 4e-08
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 52 7e-08
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 52 7e-08
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 52 1e-07
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 52 1e-07
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 50 3e-07
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 44 2e-05
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 43 4e-05
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 42 1e-04
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 42 1e-04
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 40 4e-04
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 34 0.021
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 33 0.048
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 32 0.084
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 31 0.19
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 30 0.34
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 29 0.78
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 28 1.4
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 28 1.8
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 3.2
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 3.2
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|... 27 4.2
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p... 26 7.3
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 26 7.3
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 9.6
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 97.9 bits (233), Expect = 1e-21
Identities = 44/108 (40%), Positives = 71/108 (65%)
Frame = -1
Query: 624 AHRLHVMLGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTV 445
AH++ V+ G+L + A E+HG+ +Q QR+ +L+ FR+ + + L+ATDVA+RG+DI G+ V
Sbjct: 517 AHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVV 576
Query: 444 INFTLPATLEHYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRAS 301
IN+ PAT E Y+H ++LAGEG+R ++K + K +S
Sbjct: 577 INYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVLKGVFKNSS 624
Score = 27.1 bits (57), Expect = 3.2
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = -3
Query: 202 EEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQKREEKERLALTTH 23
EE E+++ E+ K E ++K G + + R WFQ+ K K+ K A
Sbjct: 660 EEKQERELKIAERDLKKGENIMKY-----GDEIRSRPARTWFQSEKDKQASKASEAKDKK 714
Query: 22 VGKKKKK 2
K+KK
Sbjct: 715 SLAKRKK 721
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 78.6 bits (185), Expect = 1e-15
Identities = 43/106 (40%), Positives = 61/106 (57%)
Frame = -1
Query: 624 AHRLHVMLGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTV 445
A ++ +L +L ++ ELH Q +R++SL RFR + A +LVATDVA+RGLDIP V V
Sbjct: 271 AELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLV 330
Query: 444 INFTLPATLEHYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKR 307
INF LP + YIH +S+ E + +LV +I R
Sbjct: 331 INFDLPRDPDDYIHRVGRTARAGRSGESISIVTERDVDLVHAIEDR 376
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 73.3 bits (172), Expect = 4e-14
Identities = 36/72 (50%), Positives = 46/72 (63%)
Frame = -1
Query: 618 RLHVMLGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVIN 439
RL ++L LG A LHG +Q RL +L +F+ LVATDVAARGLDIP V+ VIN
Sbjct: 300 RLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVIN 359
Query: 438 FTLPATLEHYIH 403
+ +P + YIH
Sbjct: 360 YDIPTDSKAYIH 371
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 68.9 bits (161), Expect = 8e-13
Identities = 37/111 (33%), Positives = 58/111 (52%)
Frame = -1
Query: 618 RLHVMLGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVIN 439
R+ L L V + LH +Q +RL SL++F+ VLV TDVAARG+DIP V VI+
Sbjct: 404 RITPFLNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIH 463
Query: 438 FTLPATLEHYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKS 286
+ +P T + Y+H + + G E + +K + R K +++
Sbjct: 464 YHVPHTADMYVHRSGRTARANEDGVSILMCGPKELSQLKRLCYRLKKKIET 514
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 68.9 bits (161), Expect = 8e-13
Identities = 29/67 (43%), Positives = 46/67 (68%)
Frame = -1
Query: 603 LGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPA 424
L +G A LHG+ +Q QR ++++ R + AD+LVATD+A RG+DIP V+ V+N+ +
Sbjct: 536 LNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAK 595
Query: 423 TLEHYIH 403
++E Y H
Sbjct: 596 SIEDYTH 602
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 68.1 bits (159), Expect = 1e-12
Identities = 32/57 (56%), Positives = 39/57 (68%)
Frame = -1
Query: 573 LHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 403
+HG +Q RL +L F+ + VLVATDVAARGLDIP V VIN T P T+E Y+H
Sbjct: 446 IHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVH 502
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 61.3 bits (142), Expect = 2e-10
Identities = 27/60 (45%), Positives = 39/60 (65%)
Frame = -1
Query: 582 AAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 403
A +HG Q +R +L+ FR + ++VAT VA+RGLDIP V VIN+ LP ++ Y+H
Sbjct: 457 ATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVH 516
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 58.4 bits (135), Expect = 1e-09
Identities = 26/57 (45%), Positives = 38/57 (66%)
Frame = -1
Query: 573 LHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 403
+HG Q +R ++L +FR+ + VL+ATD+ ARG+D GV VINF P ++ YIH
Sbjct: 318 IHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIH 374
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 57.2 bits (132), Expect = 3e-09
Identities = 25/59 (42%), Positives = 38/59 (64%)
Frame = -1
Query: 579 AELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 403
+ +HG +Q QR + FR + +L+ TD+ ARG+D+ V+ VIN+ LPA E+YIH
Sbjct: 286 SSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIH 344
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 56.4 bits (130), Expect = 5e-09
Identities = 25/63 (39%), Positives = 37/63 (58%)
Frame = -1
Query: 591 GVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEH 412
G A +HG Q +R L FR ++ ++VATDVA+RG+D+ G+ V N+ P E
Sbjct: 393 GWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTED 452
Query: 411 YIH 403
Y+H
Sbjct: 453 YVH 455
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 56.0 bits (129), Expect = 6e-09
Identities = 25/57 (43%), Positives = 38/57 (66%)
Frame = -1
Query: 573 LHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 403
+HG Q +R ++ FR+ + VL+ TD+ ARG+D+ V+ VIN+ LPA E+YIH
Sbjct: 290 MHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIH 346
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 55.2 bits (127), Expect = 1e-08
Identities = 24/68 (35%), Positives = 43/68 (63%)
Frame = -1
Query: 606 MLGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLP 427
+L G ++++G+ +Q RL+ + FR + ++LV TDVA+RG+DIP + VIN+ P
Sbjct: 365 LLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFP 424
Query: 426 ATLEHYIH 403
+ ++H
Sbjct: 425 PQPKVFVH 432
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 53.2 bits (122), Expect = 4e-08
Identities = 23/57 (40%), Positives = 35/57 (61%)
Frame = -1
Query: 573 LHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 403
+HG Q +R+ K F++ + VATDV RG+DI VN VIN+ +P + + Y+H
Sbjct: 325 IHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLH 381
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 52.4 bits (120), Expect = 7e-08
Identities = 22/63 (34%), Positives = 36/63 (57%)
Frame = -1
Query: 591 GVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEH 412
G + +HG +Q R ++ ++ DVL+AT V ARGLD+ + V+N+ P +E
Sbjct: 692 GYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMED 751
Query: 411 YIH 403
Y+H
Sbjct: 752 YVH 754
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 52.4 bits (120), Expect = 7e-08
Identities = 23/57 (40%), Positives = 32/57 (56%)
Frame = -1
Query: 573 LHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 403
LH QR + FR+ Q+ +L ATDV ARG+D P + V+ T P+ + YIH
Sbjct: 323 LHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIH 379
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 51.6 bits (118), Expect = 1e-07
Identities = 23/68 (33%), Positives = 38/68 (55%)
Frame = -1
Query: 606 MLGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLP 427
+L + + +LHG Q +R ++ F + +L+ T+VAARGLDIP V+ ++ + P
Sbjct: 355 LLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPP 414
Query: 426 ATLEHYIH 403
YIH
Sbjct: 415 DDPRDYIH 422
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 51.6 bits (118), Expect = 1e-07
Identities = 24/63 (38%), Positives = 32/63 (50%)
Frame = -1
Query: 591 GVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEH 412
G+ LHG Q R + +F + VL TD+ ARGLD P V+ VI P ++
Sbjct: 309 GISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDT 368
Query: 411 YIH 403
YIH
Sbjct: 369 YIH 371
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 50.4 bits (115), Expect = 3e-07
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Frame = -1
Query: 573 LHGAXNQPQRLDSLKRFREQQ---ADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 403
LHG+ +Q R +L F + + +L+ TDVAARGLD+P V+ V+ + P + + Y+H
Sbjct: 473 LHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLH 532
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 44.4 bits (100), Expect = 2e-05
Identities = 24/64 (37%), Positives = 28/64 (43%)
Frame = -1
Query: 594 LGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLE 415
LG H Q R FR LV +D+ RG+DI VN VINF P E
Sbjct: 304 LGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAE 363
Query: 414 HYIH 403
Y+H
Sbjct: 364 TYLH 367
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 43.2 bits (97), Expect = 4e-05
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = -1
Query: 540 DSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYI 406
D+L +F+ + +VL+AT VA G+D+P N VI F + T+ Y+
Sbjct: 414 DTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYV 458
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 41.9 bits (94), Expect = 1e-04
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Frame = -1
Query: 573 LHGAXNQPQRLDSLKRFREQ-QADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIHXX 397
LHG Q R + ++F++ + VL TD+A+RGLDIP V+ V+ P + + H
Sbjct: 288 LHGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRC 347
Query: 396 XXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIP 274
+ L +G + +++ P+ P
Sbjct: 348 GRAGRAGRAGVAIVLLNDGREEEYEELLRVRKVPITRIDTP 388
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 41.9 bits (94), Expect = 1e-04
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Frame = -1
Query: 558 NQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIHXXXXXXXX 379
++ +R + RF ++LV +D+ ARG+D+ VIN+ P ++ Y+H
Sbjct: 472 SRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARA 531
Query: 378 XXXXXXVSLAGEGERNLVKSIVK--RASKPVKSRQI 277
+L E + +VK R + P+K +I
Sbjct: 532 GREGFAWTLVQSHEGHHFSKLVKQLRRTLPIKRIKI 567
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 39.9 bits (89), Expect = 4e-04
Identities = 22/55 (40%), Positives = 30/55 (54%)
Frame = -1
Query: 591 GVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLP 427
G A L G QR + FR + VLV T+V ARG+D+ VN V+N+ +P
Sbjct: 376 GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMP 430
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 34.3 bits (75), Expect = 0.021
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -1
Query: 594 LGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVI 442
LG+ A L G N +R ++ FR+++ VLV V G DIP ++ ++
Sbjct: 288 LGIDARALFGETNDSERETLIQDFRKKKFPVLVNCMVLTEGTDIPNIDCLM 338
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 33.1 bits (72), Expect = 0.048
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = -1
Query: 594 LGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPAT 421
+G A +Q + +++K+F++ + + L+AT + GLDI V+ +I + A+
Sbjct: 465 IGQSAVRKAAGMSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASAS 522
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 32.3 bits (70), Expect = 0.084
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 480 ARGLDIPGVNTVINFTLPATLEHYIH 403
ARGLD V V+NF +P+ + YIH
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIH 412
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/62 (22%), Positives = 31/62 (50%)
Frame = -1
Query: 621 HRLHVMLGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVI 442
+RL + L G+K+ L+ RL L+++ + +++ATD + +I + +
Sbjct: 274 YRLKLFLEQFGLKSLVLNSELPVNSRLHILEQYNKGLYQIIIATDESGMMGEIEELENNV 333
Query: 441 NF 436
+F
Sbjct: 334 DF 335
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 31.1 bits (67), Expect = 0.19
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -1
Query: 558 NQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVI 442
NQ Q+ +++ +FR + LVAT + GLDI + +I
Sbjct: 516 NQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMII 554
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 30.3 bits (65), Expect = 0.34
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = -1
Query: 591 GVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEH 412
G+KA H + +R ++ ++VAT G+D V VI+ + P +LE
Sbjct: 767 GLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEG 826
Query: 411 Y 409
Y
Sbjct: 827 Y 827
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 29.1 bits (62), Expect = 0.78
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = -3
Query: 202 EEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQKREEK 47
E+ +EK + K+E + K + L ++E + + +R+ W Q+PK + K
Sbjct: 999 EDLSEKDLKKIEAKATKKKK-LTRNEIKAKERRARERELAWLQSPKGTEKPK 1049
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -3
Query: 202 EEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRD 83
E ++ K E+ AK + L +DE +P P H RD
Sbjct: 404 ERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRD 443
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = -3
Query: 190 EKQMNKMEKQTAKLEVVL-KKDEAQPGPQHEPQRQRDWFQTPKQKREEKER 41
E ++N +E + V +KDE + + E +R+++ + K+K+E+KE+
Sbjct: 416 EAEVNGVEDSKKRKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEK 466
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -1
Query: 504 VLVATDVAARGLDIPGVNTVINFTLPATLEHYI 406
+++AT G++ GV V+++ LPA+ Y+
Sbjct: 1474 IMIATKAFGLGINYMGVRLVVHYGLPASSMDYV 1506
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -1
Query: 504 VLVATDVAARGLDIPGVNTVINFTLPATLEHYI 406
+++AT G++ GV V+++ LPA+ Y+
Sbjct: 1474 IMIATKAFGLGINYMGVRLVVHYGLPASSMDYV 1506
>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 385
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 578 AALTPSMPSMTWRRCARRLVRTKTTVRS 661
+ L S S+TW R ARR+ +++T+V S
Sbjct: 313 SVLEISTKSITWSRKARRISKSQTSVSS 340
>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 506
Score = 25.8 bits (54), Expect = 7.3
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +2
Query: 554 WFXAPCNSAALTPSMPSMTWRRCARRLVRTKTTVRSRNVRHTSA 685
W P S LTP P + W R V + T +R HT A
Sbjct: 80 WLNEPKES--LTPGNPYVIWHRKPEMKVGSPYTPSTRPASHTEA 121
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 25.8 bits (54), Expect = 7.3
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = -3
Query: 178 NKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQKREEKERLA--LTTHVGKKKK 5
+K++ + E LKK+E + + E + Q Q K+K +EKER+ + KK+
Sbjct: 269 SKLDLEIESGEYFLKKEEKERKKRAEKKEQ----QKEKKKEKEKERMKAFIPPEESSKKR 324
Query: 4 K 2
K
Sbjct: 325 K 325
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.4 bits (53), Expect = 9.6
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -3
Query: 193 AEKQMNKMEKQTAKLEVVLK-KDEAQPGPQHEPQRQRDWFQTPKQKREEKERLALTTHVG 17
AE++ + ++ AK E K K EA+ + E + + KRE +E++ T
Sbjct: 637 AEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEENAKREAEEKVKRETEEN 696
Query: 16 KKKK 5
K+K
Sbjct: 697 AKRK 700
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,133,265
Number of Sequences: 5004
Number of extensions: 33152
Number of successful extensions: 138
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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