Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_H22
(810 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 117 8e-27
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 77 1e-14
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 76 2e-14
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 73 3e-13
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 69 4e-12
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 69 4e-12
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 67 1e-11
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 67 1e-11
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 67 1e-11
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 67 1e-11
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 66 3e-11
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 66 3e-11
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 65 5e-11
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 65 5e-11
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 64 8e-11
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 64 8e-11
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 64 1e-10
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 62 3e-10
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 62 4e-10
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 62 6e-10
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 61 7e-10
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 61 1e-09
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 59 3e-09
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 59 4e-09
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 57 1e-08
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 57 1e-08
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 57 2e-08
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 57 2e-08
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 56 2e-08
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 56 2e-08
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 56 2e-08
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 56 2e-08
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 56 3e-08
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 56 4e-08
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 55 5e-08
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 55 6e-08
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 55 6e-08
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 53 2e-07
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 53 3e-07
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 52 3e-07
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 52 3e-07
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 52 3e-07
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 52 3e-07
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 52 5e-07
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 52 6e-07
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 52 6e-07
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 51 8e-07
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 50 2e-06
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 50 2e-06
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 50 2e-06
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 50 2e-06
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 49 3e-06
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 49 4e-06
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 48 6e-06
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 48 6e-06
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 48 7e-06
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 48 7e-06
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 34 1e-05
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 46 2e-05
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 46 4e-05
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 44 9e-05
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 44 9e-05
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 44 2e-04
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 42 6e-04
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 39 0.003
At1g60930.1 68414.m06858 DNA helicase, putative strong similarit... 39 0.003
At4g35740.2 68417.m05073 DNA helicase (RECQl3) identical to DNA ... 39 0.005
At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA ... 39 0.005
At1g12700.1 68414.m01473 helicase domain-containing protein / pe... 38 0.008
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 38 0.010
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 37 0.014
At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative simila... 36 0.024
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 34 0.097
At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative 33 0.17
At3g05110.1 68416.m00555 hypothetical protein 33 0.22
At1g10890.1 68414.m01251 F-box family protein contains Pfam PF00... 32 0.52
At3g52220.1 68416.m05737 expressed protein 31 0.90
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 31 0.90
At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel factory-r... 31 1.2
At4g40020.1 68417.m05666 hypothetical protein 30 1.6
At3g05060.1 68416.m00549 SAR DNA-binding protein, putative stron... 30 1.6
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si... 30 2.1
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 29 2.8
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 29 2.8
At2g15270.1 68415.m01741 expressed protein 28 6.4
At1g56660.1 68414.m06516 expressed protein 28 6.4
At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative simila... 28 8.4
At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identi... 28 8.4
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof... 28 8.4
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 117 bits (282), Expect = 8e-27
Identities = 58/130 (44%), Positives = 79/130 (60%)
Frame = -1
Query: 624 AHRLHVMLGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTV 445
AHRL ++ G+ G+KAAELHG Q QRLDSL+ FR+Q+ D L+ATDVAARGLDI GV TV
Sbjct: 425 AHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTV 484
Query: 444 INFTLPATLEHYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIPPDI 265
IN+ P ++ Y+H V+ + +R+L+K I K+ +KSR IP
Sbjct: 485 INYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAKKVGSKLKSRVIPEQS 544
Query: 264 VAKXQGETDQ 235
+ K D+
Sbjct: 545 IVKWSQIIDE 554
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 77.4 bits (182), Expect = 1e-14
Identities = 39/74 (52%), Positives = 45/74 (60%)
Frame = -1
Query: 624 AHRLHVMLGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTV 445
A RL L G KA +HG Q +R SL F+E +LVATDVAARGLDIP V V
Sbjct: 379 AERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVV 438
Query: 444 INFTLPATLEHYIH 403
IN+T P T E Y+H
Sbjct: 439 INYTFPLTTEDYVH 452
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 76.2 bits (179), Expect = 2e-14
Identities = 40/130 (30%), Positives = 68/130 (52%)
Frame = -1
Query: 615 LHVMLGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINF 436
+H L + GV+A +HG +Q R ++ F+ + DVLVATDVA++GLD P + VIN+
Sbjct: 364 IHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINY 423
Query: 435 TLPATLEHYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIPPDIVAK 256
+P +E+Y+H + + + + +K + K R IPP ++A+
Sbjct: 424 DMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQR-IPP-VLAE 481
Query: 255 XQGETDQTRT 226
G ++T T
Sbjct: 482 LNGPMEETET 491
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 72.5 bits (170), Expect = 3e-13
Identities = 39/130 (30%), Positives = 66/130 (50%)
Frame = -1
Query: 615 LHVMLGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINF 436
+H L + GV+A +HG +Q R ++ F+ + DVLVATDVA++GLD P + VIN+
Sbjct: 413 IHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINY 472
Query: 435 TLPATLEHYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIPPDIVAK 256
+PA +E+Y+H + + + +K + K R IPP ++A+
Sbjct: 473 DMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQR-IPP-VLAE 530
Query: 255 XQGETDQTRT 226
++ T
Sbjct: 531 LNDPMEEAET 540
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 68.9 bits (161), Expect = 4e-12
Identities = 31/71 (43%), Positives = 47/71 (66%)
Frame = -1
Query: 615 LHVMLGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINF 436
L ++L LG +A + G Q +RL +L +F+ + ++LV TDVA+RGLDIP V+ VIN+
Sbjct: 276 LALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVVINY 335
Query: 435 TLPATLEHYIH 403
+P + YIH
Sbjct: 336 DIPTNSKDYIH 346
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 68.9 bits (161), Expect = 4e-12
Identities = 37/110 (33%), Positives = 58/110 (52%)
Frame = -1
Query: 618 RLHVMLGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVIN 439
RL +ML L V+ +H +Q RL +L +F+ + +L+ATDVA+RGLDIP V+ VIN
Sbjct: 317 RLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKVPILLATDVASRGLDIPTVDLVIN 376
Query: 438 FTLPATLEHYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVK 289
+ +P Y+H VS+ E + L+ I + K ++
Sbjct: 377 YDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEEEVGKKME 426
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 67.3 bits (157), Expect = 1e-11
Identities = 34/74 (45%), Positives = 45/74 (60%)
Frame = -1
Query: 624 AHRLHVMLGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTV 445
A L L + G A +HG Q +R +LK F+ + +LVATDVAARGLDIP V V
Sbjct: 431 ADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHV 490
Query: 444 INFTLPATLEHYIH 403
+NF LP ++ Y+H
Sbjct: 491 VNFDLPNDIDDYVH 504
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 66.9 bits (156), Expect = 1e-11
Identities = 34/106 (32%), Positives = 55/106 (51%)
Frame = -1
Query: 582 AAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 403
AA +HG +QP+R + L +FR + VLVATDVAARGLD+ + V+N+ P +E Y+H
Sbjct: 429 AAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVH 488
Query: 402 XXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIPPDI 265
+ G+ + ++K ++++PP I
Sbjct: 489 RIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEG--ANQRVPPQI 532
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 66.9 bits (156), Expect = 1e-11
Identities = 34/106 (32%), Positives = 55/106 (51%)
Frame = -1
Query: 582 AAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 403
AA +HG +QP+R + L +FR + VLVATDVAARGLD+ + V+N+ P +E Y+H
Sbjct: 429 AAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVH 488
Query: 402 XXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIPPDI 265
+ G+ + ++K ++++PP I
Sbjct: 489 RIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEG--ANQRVPPQI 532
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 66.9 bits (156), Expect = 1e-11
Identities = 34/106 (32%), Positives = 55/106 (51%)
Frame = -1
Query: 582 AAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 403
AA +HG +QP+R + L +FR + VLVATDVAARGLD+ + V+N+ P +E Y+H
Sbjct: 429 AAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVH 488
Query: 402 XXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIPPDI 265
+ G+ + ++K ++++PP I
Sbjct: 489 RIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEG--ANQRVPPQI 532
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 65.7 bits (153), Expect = 3e-11
Identities = 33/74 (44%), Positives = 46/74 (62%)
Frame = -1
Query: 624 AHRLHVMLGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTV 445
A L L + G A +HG +Q +R +L+ F+ + +LVATDVAARGLDIP V V
Sbjct: 418 ADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHV 477
Query: 444 INFTLPATLEHYIH 403
+NF LP ++ Y+H
Sbjct: 478 VNFDLPNDIDDYVH 491
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 65.7 bits (153), Expect = 3e-11
Identities = 35/92 (38%), Positives = 49/92 (53%)
Frame = -1
Query: 585 KAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYI 406
K LHG +Q QR +L FR+ +LVATDVAARGLD+P V+ VI++ LP E ++
Sbjct: 386 KCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFV 445
Query: 405 HXXXXXXXXXXXXXXVSLAGEGERNLVKSIVK 310
H + + G+ + VK I K
Sbjct: 446 HRTGRTGRAGKKGSAILIHGQDQTRAVKMIEK 477
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 65.3 bits (152), Expect = 5e-11
Identities = 33/106 (31%), Positives = 54/106 (50%)
Frame = -1
Query: 582 AAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 403
AA +HG +Q +R D L +FR + VLVATDVAARGLD+ + V+N+ P +E Y+H
Sbjct: 500 AAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVH 559
Query: 402 XXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIPPDI 265
+ G+ + ++K ++++PP +
Sbjct: 560 RIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEG--ANQKVPPQV 603
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 65.3 bits (152), Expect = 5e-11
Identities = 32/67 (47%), Positives = 42/67 (62%)
Frame = -1
Query: 603 LGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPA 424
L G + LHG +Q QR SL+ FR ++ +VLVATDV RG+DIP V VIN+ +P
Sbjct: 596 LDKAGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPK 655
Query: 423 TLEHYIH 403
+E Y H
Sbjct: 656 HIEMYTH 662
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 64.5 bits (150), Expect = 8e-11
Identities = 36/105 (34%), Positives = 51/105 (48%)
Frame = -1
Query: 624 AHRLHVMLGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTV 445
A L L M A +HG Q +R +L+ F+ + +LVATDVAARGLDIP V V
Sbjct: 421 ADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHV 480
Query: 444 INFTLPATLEHYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVK 310
+NF LP ++ Y+H + E L +S+ +
Sbjct: 481 VNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAE 525
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 64.5 bits (150), Expect = 8e-11
Identities = 36/105 (34%), Positives = 51/105 (48%)
Frame = -1
Query: 624 AHRLHVMLGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTV 445
A L L M A +HG Q +R +L+ F+ + +LVATDVAARGLDIP V V
Sbjct: 421 ADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHV 480
Query: 444 INFTLPATLEHYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVK 310
+NF LP ++ Y+H + E L +S+ +
Sbjct: 481 VNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAE 525
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 63.7 bits (148), Expect = 1e-10
Identities = 29/61 (47%), Positives = 41/61 (67%)
Frame = -1
Query: 585 KAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYI 406
K LHG +Q QR +L FR+ ++LVATDVAARGLD+P V+ +I++ LP E ++
Sbjct: 374 KCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFV 433
Query: 405 H 403
H
Sbjct: 434 H 434
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 62.5 bits (145), Expect = 3e-10
Identities = 27/71 (38%), Positives = 45/71 (63%)
Frame = -1
Query: 615 LHVMLGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINF 436
+ L + K A LHG +Q R+++L++F+ VL+ATDVAARGLDI + TV+N+
Sbjct: 489 IEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNY 548
Query: 435 TLPATLEHYIH 403
+ ++ ++H
Sbjct: 549 DIAKDMDMHVH 559
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 62.1 bits (144), Expect = 4e-10
Identities = 28/68 (41%), Positives = 42/68 (61%)
Frame = -1
Query: 606 MLGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLP 427
+L +LG+ L Q RL S+ RFR + +L+ATD+ ARG+DI V T+I++ LP
Sbjct: 521 LLKILGLDVCTLFSEMKQRARLKSIDRFRASENGILIATDLVARGIDIKNVRTIIHYKLP 580
Query: 426 ATLEHYIH 403
+ E Y+H
Sbjct: 581 HSAEVYVH 588
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 61.7 bits (143), Expect = 6e-10
Identities = 30/67 (44%), Positives = 41/67 (61%)
Frame = -1
Query: 603 LGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPA 424
L M G A +HG +Q +R L FR ++ ++ ATDVAARGLD+ V VIN+ P
Sbjct: 364 LRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPG 423
Query: 423 TLEHYIH 403
+LE Y+H
Sbjct: 424 SLEDYVH 430
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 61.3 bits (142), Expect = 7e-10
Identities = 30/57 (52%), Positives = 40/57 (70%)
Frame = -1
Query: 573 LHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 403
LHG +Q QR +L FR+ + VLVATDVA+RGLDIP V+ VI++ LP E ++H
Sbjct: 380 LHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVH 436
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 60.9 bits (141), Expect = 1e-09
Identities = 29/67 (43%), Positives = 40/67 (59%)
Frame = -1
Query: 603 LGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPA 424
L M G A +HG Q +R L F+ ++ ++ ATDVAARGLD+ + V+N+ P
Sbjct: 430 LRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPN 489
Query: 423 TLEHYIH 403
TLE YIH
Sbjct: 490 TLEDYIH 496
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 59.3 bits (137), Expect = 3e-09
Identities = 40/120 (33%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Frame = -1
Query: 618 RLHVMLGMLG---VKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNT 448
RL +L G +KA E G NQ R LK FR+ VLVA+D RG+D+ GV
Sbjct: 340 RLCKLLNFFGDPKIKAKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTN 399
Query: 447 VINFTLPATLEHYIHXXXXXXXXXXXXXXVSLAGEGE-RNLVKSIVKRASKPVKSRQIPP 271
VIN+ +P + +IH +L E R K + K S IPP
Sbjct: 400 VINYDMPPFAKTFIHRAGRTARAGQAGRCFTLLSNHEVRRFSKLLEKVGSDSCPIYPIPP 459
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 58.8 bits (136), Expect = 4e-09
Identities = 28/60 (46%), Positives = 38/60 (63%)
Frame = -1
Query: 582 AAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 403
A +HG Q +R L +FR ++ VL+ATDVAARGLDI + VIN+ P +E Y+H
Sbjct: 706 AVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVH 765
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 57.2 bits (132), Expect = 1e-08
Identities = 34/110 (30%), Positives = 52/110 (47%)
Frame = -1
Query: 591 GVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEH 412
GVKA +HG +R D + F + VLV+T V RG+D+ V VI F +P+T++
Sbjct: 382 GVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKE 441
Query: 411 YIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIPPDIV 262
YIH + E +RNL +V A+ IP +++
Sbjct: 442 YIHVIGRASRMGEKGTAIVFVNEDDRNLFPDLV--AALKSSGAAIPKELI 489
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 57.2 bits (132), Expect = 1e-08
Identities = 34/110 (30%), Positives = 52/110 (47%)
Frame = -1
Query: 591 GVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEH 412
GVKA +HG +R D + F + VLV+T V RG+D+ V VI F +P+T++
Sbjct: 245 GVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKE 304
Query: 411 YIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIPPDIV 262
YIH + E +RNL +V A+ IP +++
Sbjct: 305 YIHVIGRASRMGEKGTAIVFVNEDDRNLFPDLV--AALKSSGAAIPKELI 352
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 56.8 bits (131), Expect = 2e-08
Identities = 32/106 (30%), Positives = 54/106 (50%)
Frame = -1
Query: 579 AELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIHX 400
+ +HG Q +R D + +FR ++ VL+A+DV ARG+D+ V+ VIN+ +P E YIH
Sbjct: 289 SSMHGDKRQKERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHR 348
Query: 399 XXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIPPDIV 262
++ + +K I + K R++P D+V
Sbjct: 349 IGRAGRFGREGVAINFVKSSDMKDLKDIERHYG--TKIREMPADLV 392
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 56.8 bits (131), Expect = 2e-08
Identities = 32/117 (27%), Positives = 53/117 (45%)
Frame = -1
Query: 573 LHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIHXXX 394
LHG +Q R ++ F+ ++L+AT VAARGLD+ + V+NF P E Y+H
Sbjct: 806 LHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVG 865
Query: 393 XXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIPPDIVAKXQGETDQTRTG 223
V+ E + +VK + + + +P D+ A G + + G
Sbjct: 866 RTGRAGRKGCAVTFISEDDAKYAPDLVK--ALELSEQPVPDDLKALADGFMVKVKQG 920
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/57 (42%), Positives = 36/57 (63%)
Frame = -1
Query: 573 LHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 403
+H +Q +RL K F+E +LVATD+ RG+DI VN VIN+ +P + + Y+H
Sbjct: 318 IHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLH 374
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/57 (42%), Positives = 36/57 (63%)
Frame = -1
Query: 573 LHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 403
+H +Q +RL K F+E +LVATD+ RG+DI VN VIN+ +P + + Y+H
Sbjct: 235 IHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLH 291
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/57 (42%), Positives = 36/57 (63%)
Frame = -1
Query: 573 LHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 403
+H +Q +RL K F+E +LVATD+ RG+DI VN VIN+ +P + + Y+H
Sbjct: 318 IHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLH 374
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 56.4 bits (130), Expect = 2e-08
Identities = 30/99 (30%), Positives = 49/99 (49%)
Frame = -1
Query: 591 GVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEH 412
G+ +AE+HG + R LK+F+ + VLV +++ARGLD+ + V+N LP H
Sbjct: 431 GMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVH 490
Query: 411 YIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKP 295
Y H V++ E + +VK + K+ P
Sbjct: 491 YAHRAGRTGRLGRKGTVVTVCEESQVFIVKKMEKQLGLP 529
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 56.0 bits (129), Expect = 3e-08
Identities = 26/68 (38%), Positives = 39/68 (57%)
Frame = -1
Query: 606 MLGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLP 427
+LG L + E+H Q R FR+ ++ +LV +DV+ARG+D P V+ V+ LP
Sbjct: 357 LLGKLSLNVREIHSRKPQSYRTRVSDEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLP 416
Query: 426 ATLEHYIH 403
+ E YIH
Sbjct: 417 SDREQYIH 424
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 55.6 bits (128), Expect = 4e-08
Identities = 27/70 (38%), Positives = 37/70 (52%)
Frame = -1
Query: 624 AHRLHVMLGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTV 445
A ++H L +G +HG + R +K F+E VL+ATDV ARG D VN V
Sbjct: 353 AQKVHKALAEMGYDVTSVHGNLTESDRDKIVKEFKECLTQVLIATDVIARGFDQQRVNLV 412
Query: 444 INFTLPATLE 415
+N+ LP E
Sbjct: 413 VNYNLPTKYE 422
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 55.2 bits (127), Expect = 5e-08
Identities = 26/68 (38%), Positives = 38/68 (55%)
Frame = -1
Query: 606 MLGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLP 427
+L L + E+H Q R FR+ +A +LV +DV+ARG+D P V+ V+ LP
Sbjct: 659 LLSQLSLNVREIHSRKPQSYRTRVSDEFRKSKAIILVTSDVSARGVDYPDVSLVVQMGLP 718
Query: 426 ATLEHYIH 403
+ E YIH
Sbjct: 719 SDREQYIH 726
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 54.8 bits (126), Expect = 6e-08
Identities = 27/74 (36%), Positives = 42/74 (56%)
Frame = -1
Query: 624 AHRLHVMLGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTV 445
A L+ L ++A +H +R +++ +FR + VL+ATDV ARG+D G+N V
Sbjct: 393 AKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVIARGMDFKGINCV 452
Query: 444 INFTLPATLEHYIH 403
IN+ P + YIH
Sbjct: 453 INYDFPDSASAYIH 466
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 54.8 bits (126), Expect = 6e-08
Identities = 25/64 (39%), Positives = 35/64 (54%)
Frame = -1
Query: 594 LGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLE 415
L K LHG+ Q R + F+ ++ VL++TDVAARGLD P V +I + P
Sbjct: 372 LKCKTFRLHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEAT 431
Query: 414 HYIH 403
Y+H
Sbjct: 432 EYVH 435
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/68 (38%), Positives = 36/68 (52%)
Frame = -1
Query: 606 MLGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLP 427
+LG L + E+H Q R FR+ + +LV +DV+ARG+D P V V+ LP
Sbjct: 331 LLGELNLNVREIHSRKPQSYRTRVSNEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLP 390
Query: 426 ATLEHYIH 403
E YIH
Sbjct: 391 KDREQYIH 398
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 52.8 bits (121), Expect = 3e-07
Identities = 25/56 (44%), Positives = 35/56 (62%)
Frame = -1
Query: 570 HGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 403
HG +Q R +L F E + VL+ TDVAARGLDIPG++ V+ + P + +IH
Sbjct: 300 HGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIH 355
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 52.4 bits (120), Expect = 3e-07
Identities = 24/62 (38%), Positives = 37/62 (59%)
Frame = -1
Query: 588 VKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHY 409
V +++HG +Q +R + F + + +L+ TDVAARGLDIP V+ +I + P Y
Sbjct: 359 VDVSDIHGGMDQNRRTKTFFDFMKAKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEY 418
Query: 408 IH 403
IH
Sbjct: 419 IH 420
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 52.4 bits (120), Expect = 3e-07
Identities = 24/56 (42%), Positives = 35/56 (62%)
Frame = -1
Query: 570 HGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 403
HG +Q R ++ FR + VL+ TD+ ARG+D+ V+ VINF LP E+Y+H
Sbjct: 309 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLH 364
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 52.4 bits (120), Expect = 3e-07
Identities = 24/56 (42%), Positives = 35/56 (62%)
Frame = -1
Query: 570 HGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 403
HG +Q R ++ FR + VL+ TD+ ARG+D+ V+ VINF LP E+Y+H
Sbjct: 311 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLH 366
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 52.4 bits (120), Expect = 3e-07
Identities = 24/56 (42%), Positives = 35/56 (62%)
Frame = -1
Query: 570 HGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 403
HG +Q R ++ FR + VL+ TD+ ARG+D+ V+ VINF LP E+Y+H
Sbjct: 309 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLH 364
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 52.0 bits (119), Expect = 5e-07
Identities = 25/59 (42%), Positives = 35/59 (59%)
Frame = -1
Query: 579 AELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 403
+ +HG Q +R + FR + VL+ TDV ARG+D+ V+ VIN+ LP E YIH
Sbjct: 302 SSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIH 360
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 51.6 bits (118), Expect = 6e-07
Identities = 24/57 (42%), Positives = 33/57 (57%)
Frame = -1
Query: 573 LHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 403
L G N R SL R+ +LV+TD+AARG+D+P + NF LP T+ Y+H
Sbjct: 371 LEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLH 427
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 51.6 bits (118), Expect = 6e-07
Identities = 24/57 (42%), Positives = 33/57 (57%)
Frame = -1
Query: 573 LHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 403
L G N R SL R+ +LV+TD+AARG+D+P + NF LP T+ Y+H
Sbjct: 214 LEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLH 270
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 51.2 bits (117), Expect = 8e-07
Identities = 39/110 (35%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Frame = -1
Query: 573 LHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIHXXX 394
LHG Q QR +L FR + LVAT+VAARGLDI V +I P +E YIH
Sbjct: 376 LHGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSG 435
Query: 393 XXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIP-PDIVAKXQG 247
V+L + ++ V I K A + P PD +A+ G
Sbjct: 436 RTGRAGNTGVAVTLY-DSRKSSVSRIEKEAGIKFEHLAAPQPDEIARSGG 484
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 50.0 bits (114), Expect = 2e-06
Identities = 28/105 (26%), Positives = 48/105 (45%)
Frame = -1
Query: 537 SLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIHXXXXXXXXXXXXXXV 358
S+ F+ ++L+AT VAARGLD+ + V+NF P E Y+H V
Sbjct: 656 SISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAV 715
Query: 357 SLAGEGERNLVKSIVKRASKPVKSRQIPPDIVAKXQGETDQTRTG 223
+ E + +VK + + + +P D+ A +G + + G
Sbjct: 716 TFISEDDAKYAPDLVK--ALELSEQPVPDDVKAVAEGFMAKVKQG 758
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 50.0 bits (114), Expect = 2e-06
Identities = 31/128 (24%), Positives = 57/128 (44%)
Frame = -1
Query: 615 LHVMLGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINF 436
++ +L + + E+H Q R F+E +LV +DV+ARG++ P V VI
Sbjct: 650 MYTLLREMKLNVREIHARKPQLHRTCVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQV 709
Query: 435 TLPATLEHYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIPPDIVAK 256
+P+ E YIH + L ER + + +P+ + PD+ ++
Sbjct: 710 GIPSDREQYIHRLGRTGREGKGGKGLLLIAPWERYFLDELKDLPLEPIPA----PDLDSR 765
Query: 255 XQGETDQT 232
+ + DQ+
Sbjct: 766 VKHQVDQS 773
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/64 (40%), Positives = 30/64 (46%)
Frame = -1
Query: 594 LGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLE 415
LG +H Q R FR LV TD+ RG+DI VN VINF P T E
Sbjct: 384 LGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSE 443
Query: 414 HYIH 403
Y+H
Sbjct: 444 SYLH 447
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/64 (40%), Positives = 30/64 (46%)
Frame = -1
Query: 594 LGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLE 415
LG +H Q R FR LV TD+ RG+DI VN VINF P T E
Sbjct: 384 LGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSE 443
Query: 414 HYIH 403
Y+H
Sbjct: 444 SYLH 447
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 49.2 bits (112), Expect = 3e-06
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Frame = -1
Query: 588 VKAAELHGAXNQPQRLDSLKRFREQQAD--VLVATDVAARGLDIPGVNTVINFTLPATLE 415
+ HG QR+++LK+F++++ D LV TD+AARGLD+ V+ V+ F P
Sbjct: 395 ISTVNYHGEVPAEQRVENLKKFKDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPKNSI 453
Query: 414 HYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIPPDIVAKXQGETDQ 235
Y+H SL ++ L I + + D V + T
Sbjct: 454 DYLHRTGRTARMGAKGKVTSLVSRKDQMLAARIEEAMRNNESLESLTTDNVRRDAARTHI 513
Query: 234 TR 229
T+
Sbjct: 514 TQ 515
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 48.8 bits (111), Expect = 4e-06
Identities = 26/64 (40%), Positives = 30/64 (46%)
Frame = -1
Query: 594 LGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLE 415
LG +H Q R FR LV TD+ RG+DI VN VINF P T E
Sbjct: 414 LGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSE 473
Query: 414 HYIH 403
Y+H
Sbjct: 474 SYLH 477
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 48.4 bits (110), Expect = 6e-06
Identities = 21/62 (33%), Positives = 39/62 (62%)
Frame = -1
Query: 588 VKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHY 409
++ + +G +Q R + RFR ++ +L+ TD+AARG+DIP ++ VIN+ P + +
Sbjct: 296 IEPSVCYGDMDQDARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIF 355
Query: 408 IH 403
+H
Sbjct: 356 VH 357
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 48.4 bits (110), Expect = 6e-06
Identities = 31/128 (24%), Positives = 56/128 (43%)
Frame = -1
Query: 615 LHVMLGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINF 436
++ +L + + E+H Q R F+E +LV +DV+ARG++ P V VI
Sbjct: 603 MYTLLREMKLNVREIHARKPQLHRTRVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQV 662
Query: 435 TLPATLEHYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIPPDIVAK 256
+P+ E YIH + L ER + + +P+ + PD+ +
Sbjct: 663 GIPSDREQYIHRLGRTGREGKGGEGLLLIAPWERYFLDELKDLPLEPIPA----PDLDSI 718
Query: 255 XQGETDQT 232
+ + DQ+
Sbjct: 719 VKHQVDQS 726
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 48.0 bits (109), Expect = 7e-06
Identities = 35/110 (31%), Positives = 44/110 (40%)
Frame = -1
Query: 594 LGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLE 415
LG +H Q R FR LV TD+ RG+DI VN VINF P E
Sbjct: 391 LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAE 450
Query: 414 HYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIPPDI 265
Y+H V+L +R + I + +K QIPP I
Sbjct: 451 TYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIK--QIPPHI 498
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 48.0 bits (109), Expect = 7e-06
Identities = 35/110 (31%), Positives = 44/110 (40%)
Frame = -1
Query: 594 LGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLE 415
LG +H Q R FR LV TD+ RG+DI VN VINF P E
Sbjct: 391 LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAE 450
Query: 414 HYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIPPDI 265
Y+H V+L +R + I + +K QIPP I
Sbjct: 451 TYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIK--QIPPHI 498
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 33.9 bits (74), Expect(2) = 1e-05
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = -1
Query: 618 RLHVMLGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATD 487
RL + L G+K+A L+G Q RL L++F D L+ATD
Sbjct: 316 RLKLFLEKFGIKSAILNGELPQNSRLHILEQFNAGLFDYLIATD 359
Score = 32.7 bits (71), Expect(2) = 1e-05
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -1
Query: 477 RGLDIPGVNTVINFTLPATLEHYIH 403
RG+D V+TVINF +P ++ YIH
Sbjct: 398 RGIDFKKVHTVINFDMPQSVTGYIH 422
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/57 (38%), Positives = 32/57 (56%)
Frame = -1
Query: 573 LHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 403
+HG Q R +L F + + L+ TDVAARGLDIPG++ V+ + P + H
Sbjct: 308 IHGDMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNH 364
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = -1
Query: 576 ELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 403
E+ G +Q +R + +F + + +L+ T+VAARGLD P V+ ++ + P YIH
Sbjct: 429 EIRGGIDQNKRTPTFLQFIKAETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIH 486
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 44.4 bits (100), Expect = 9e-05
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = -1
Query: 591 GVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDI-PGVNTVINFTLPATLE 415
G+ LHG +Q +R+ +F E+Q+ VL TDV ARGLD V+ V+ P +
Sbjct: 342 GIPLKSLHGKMSQEKRMGVYSQFIERQS-VLFCTDVLARGLDFDKAVDWVVQVDCPEDVA 400
Query: 414 HYIH 403
YIH
Sbjct: 401 SYIH 404
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 44.4 bits (100), Expect = 9e-05
Identities = 21/39 (53%), Positives = 26/39 (66%)
Frame = -1
Query: 570 HGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGV 454
HG +Q R +L F E + VL+ TDVAARGLDIPG+
Sbjct: 273 HGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGI 311
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/97 (28%), Positives = 43/97 (44%)
Frame = -1
Query: 606 MLGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLP 427
+L ++ H +R + L FRE V V TD AARG+D+P V+ VI
Sbjct: 443 ILEKASIQCYRYHKNHKLDERANILADFRET-GGVFVCTDAAARGVDVPNVSHVIQADFA 501
Query: 426 ATLEHYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSI 316
++ ++H SL E R+LV++I
Sbjct: 502 SSAVDFLHRIGRTARAGQYGTVTSLYTEANRDLVEAI 538
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/48 (43%), Positives = 28/48 (58%)
Frame = -1
Query: 549 QRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYI 406
Q D++ +FR+ +LVAT VA GLDI N V+ F L T+ YI
Sbjct: 711 QMQDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYI 758
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar
to CAF protein [Arabidopsis thaliana] GI:6102610;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF03368:
Domain of unknown function, PF00636: RNase3 domain,
PF00035: Double-stranded RNA binding motif
Length = 1676
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = -1
Query: 534 LKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYI 406
LKRF+ ++ ++LVAT V GLDI VI + LP T+ +I
Sbjct: 564 LKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFI 606
>At1g60930.1 68414.m06858 DNA helicase, putative strong similarity
to DNA Helicase recQl4B [Arabidopsis thaliana]
GI:11121451; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00570: HRDC domain
Length = 1024
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/65 (30%), Positives = 37/65 (56%)
Frame = -1
Query: 603 LGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPA 424
L + G KAA HG+ + +R K++ + + +++ AT G++ P V VI+ +LP
Sbjct: 646 LRVFGHKAAFYHGSMDPGKRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPK 705
Query: 423 TLEHY 409
++E Y
Sbjct: 706 SIEGY 710
>At4g35740.2 68417.m05073 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 620
Score = 38.7 bits (86), Expect = 0.005
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -1
Query: 615 LHVMLGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINF 436
L V L +G+ +A H N R L + + ++VAT G+D V V +F
Sbjct: 179 LSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHF 238
Query: 435 TLPATLEHY 409
+P ++E +
Sbjct: 239 NIPKSMESF 247
>At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 713
Score = 38.7 bits (86), Expect = 0.005
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -1
Query: 615 LHVMLGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINF 436
L V L +G+ +A H N R L + + ++VAT G+D V V +F
Sbjct: 272 LSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHF 331
Query: 435 TLPATLEHY 409
+P ++E +
Sbjct: 332 NIPKSMESF 340
>At1g12700.1 68414.m01473 helicase domain-containing protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles PF01535: PPR repeat, PF00271:
Helicase conserved C-terminal domain
Length = 828
Score = 37.9 bits (84), Expect = 0.008
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = -1
Query: 591 GVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEH 412
G+ +AEL+ + +R LK+F+ + VLV ++ GL+ + +++ LP H
Sbjct: 639 GMNSAELNRDLRKLRRSSVLKKFKNRDVRVLVTNELLTWGLEDAECDLMVDLELPTDAVH 698
Query: 411 YIH 403
Y H
Sbjct: 699 YAH 701
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 37.5 bits (83), Expect = 0.010
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = -1
Query: 603 LGMLGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGV 454
L M G A +HG Q +R L F+ ++ ++ ATDVAARGL G+
Sbjct: 430 LRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLVSSGI 479
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 37.1 bits (82), Expect = 0.014
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = -1
Query: 591 GVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEH 412
G KAA HG+ QR ++ + + +++ AT G++ P V VI+ +LP ++E
Sbjct: 697 GHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 756
Query: 411 Y 409
Y
Sbjct: 757 Y 757
>At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative similar
to C-terminal half of transcription-repair coupling
factor (TRCF) GB:Q55750 [Synechocystis PCC6803];
contains Pfam profile: helicases conserved C-terminal
domain
Length = 823
Score = 36.3 bits (80), Expect = 0.024
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = -1
Query: 588 VKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVI 442
+ A HG Q ++++RF + + +L+ T++ GLDI NT+I
Sbjct: 507 IDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTII 555
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 34.3 bits (75), Expect = 0.097
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = -1
Query: 588 VKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHY 409
+ A H R+ + F + V+VAT GLD V VI+F++P ++E Y
Sbjct: 511 INAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVAFGMGLDKGDVGAVIHFSVPGSMEEY 570
Query: 408 I 406
+
Sbjct: 571 V 571
>At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative
Length = 953
Score = 33.5 bits (73), Expect = 0.17
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = -1
Query: 573 LHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVI 442
LHG + ++L +FR + +L++T V G+D+P + ++
Sbjct: 802 LHGRMKSDDKEEALNKFRSGETQILLSTQVIEIGVDVPDASMMV 845
>At3g05110.1 68416.m00555 hypothetical protein
Length = 372
Score = 33.1 bits (72), Expect = 0.22
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = -3
Query: 214 QFSXEEYAEK---QMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQKREEKE 44
Q E+ +E+ + +M K+T +E LK+ EA+ E + +R +F +++ EEKE
Sbjct: 38 QIQKEDSSEEICTESERMRKETELIETSLKQLEARENELREVEAKRKFFDLKEKELEEKE 97
Query: 43 R 41
+
Sbjct: 98 K 98
>At1g10890.1 68414.m01251 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 592
Score = 31.9 bits (69), Expect = 0.52
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = -3
Query: 202 EEYAEKQMNKMEKQTAKLEVVL-KKDEAQPGPQHEPQRQRDWFQTPKQKREEKERLALTT 26
E AE+ + ++E+ K + +K+E + E QRQ++ K+ EE+ERL
Sbjct: 156 ERIAEENLKRVEEAQRKEAMERQRKEEERYRELEELQRQKEEAMRRKKAEEEEERLKQMK 215
Query: 25 HVGKKKKK 2
+GK K +
Sbjct: 216 LLGKNKSR 223
>At3g52220.1 68416.m05737 expressed protein
Length = 237
Score = 31.1 bits (67), Expect = 0.90
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -3
Query: 199 EYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQKREEKER 41
E +K+ + E++ AK E + D + +HE + RD K K+E+KE+
Sbjct: 176 ERDQKKDRREERKPAKREKEERHDRREKRERHEKRSARDSDDRKKHKKEKKEK 228
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 31.1 bits (67), Expect = 0.90
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = -1
Query: 588 VKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHY 409
VK H QR+D ++++ + ++ AT G+D V VI+ TL +E Y
Sbjct: 453 VKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMGIDKADVRFVIHNTLSKAVESY 512
>At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel
factory-related similar to RNA helicase GB:AAF03534
Length = 1317
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -1
Query: 567 GAXNQPQRLDS--LKRFREQQADVLVATDVAARGLDIPGVNTVINF 436
G NQ ++ + ++ FR +++VAT + GLD+ N VI F
Sbjct: 426 GLQNQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRF 471
>At4g40020.1 68417.m05666 hypothetical protein
Length = 615
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = -3
Query: 214 QFSXEEYAEKQMNKMEKQTAKL-EVVLKKDEAQPGPQHEPQRQRDWFQTPKQKREEKER 41
+ + EE ++ +N+ E ++ EVV KK E + + + + +++ ++ K+K+E E+
Sbjct: 369 EVAMEEEKQRSLNRQESMPKEVVEVVEKKIEEKEKKEEKKENKKEKKESKKEKKEHSEK 427
>At3g05060.1 68416.m00549 SAR DNA-binding protein, putative strong
similarity to SAR DNA-binding protein-1 [Pisum sativum]
GI:3132696; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 533
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = -3
Query: 202 EEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQKREEKER 41
EE +EK+ K + + V + K+E + + + + +TP +K+++KE+
Sbjct: 474 EEPSEKKKKKKAEAETEAVVEVAKEEKKKNKKKRKHEEEETTETPAKKKDKKEK 527
>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
similarity to RNA helicase/RNAseIII CAF protein
[Arabidopsis thaliana] GI:6102610; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1324
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -1
Query: 534 LKRFREQQADVLVATDVAARGLDIPGVNTVINF 436
L++FR +V+VAT + GLDI V+ VI F
Sbjct: 520 LEKFRAGGFNVIVATSIGEEGLDIMEVDLVICF 552
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 29.5 bits (63), Expect = 2.8
Identities = 8/28 (28%), Positives = 22/28 (78%)
Frame = -3
Query: 124 AQPGPQHEPQRQRDWFQTPKQKREEKER 41
+ PG PQ+ R++F++P+Q+++++++
Sbjct: 91 SSPGSMQMPQQSRNFFESPQQQQQQQQQ 118
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 29.5 bits (63), Expect = 2.8
Identities = 8/28 (28%), Positives = 22/28 (78%)
Frame = -3
Query: 124 AQPGPQHEPQRQRDWFQTPKQKREEKER 41
+ PG PQ+ R++F++P+Q+++++++
Sbjct: 91 SSPGSMQMPQQSRNFFESPQQQQQQQQQ 118
>At2g15270.1 68415.m01741 expressed protein
Length = 194
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = -3
Query: 166 KQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQKREEKERLALTTHVGKKKKK 2
K+ E ++++E Q + + ++R Q KQK++EK++ TT K+ +
Sbjct: 105 KRLKMAEFTIRREEKQKAAEEKTSKKRLKRQKKKQKKQEKKQKPNTTEEEVKQPR 159
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/71 (25%), Positives = 33/71 (46%)
Frame = -3
Query: 214 QFSXEEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQKREEKERLA 35
+ E+ +K+ NK EK + E KK + + + Q + + + +K ++KE+
Sbjct: 125 ELEEEKEGKKKKNKKEKDESGPEEKNKKADKEKKHEDVSQEKEELEEEDGKKNKKKEKDE 184
Query: 34 LTTHVGKKKKK 2
T KKK K
Sbjct: 185 SGTEEKKKKPK 195
>At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative similar
to WRN (Werner syndrome) protein - Mus musculus,
EMBL:AF241636; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00627: UBA/TS-N domain
Length = 858
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = -1
Query: 594 LGVKAAELHGAXNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLE 415
+G+KAA + + + + F + + V+VAT G+D V +I++ +LE
Sbjct: 520 VGLKAAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAFGMGIDKKNVRKIIHYGWLQSLE 579
Query: 414 HY 409
Y
Sbjct: 580 AY 581
>At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identical
to CLC-d chloride channel protein [Arabidopsis thaliana]
GI:1742959
Length = 792
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +2
Query: 269 SGGICLD---LTGLDARLTIDLTRFLSPSP 349
S G+C++ LT D + IDL FL+PSP
Sbjct: 679 SKGLCIEDIHLTSDDLEMYIDLAPFLNPSP 708
>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
PF00190: Cupin
Length = 707
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/66 (21%), Positives = 34/66 (51%)
Frame = -3
Query: 199 EYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQKREEKERLALTTHV 20
E K+ + +Q K E +K+E + E +++++ + +++REE+ER
Sbjct: 503 EEERKKREEEAEQARKREEEREKEEEMAKKREEERQRKEREEVERKRREEQERKRREEEA 562
Query: 19 GKKKKK 2
K++++
Sbjct: 563 RKREEE 568
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,592,654
Number of Sequences: 28952
Number of extensions: 190161
Number of successful extensions: 799
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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