Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_H18
(804 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0077 - 546033-546223,546314-546566,546635-546865,547165-54... 29 3.3
12_01_0302 - 2286171-2286341,2286747-2286968 29 4.3
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 5.7
06_01_1169 + 9996068-9996265,9996356-9998589,9998675-9998926,999... 29 5.7
05_01_0492 - 4102379-4103494,4104105-4104383,4105395-4105724 29 5.7
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 5.7
08_02_1615 + 28257275-28258428,28258523-28259144 28 7.6
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 28 10.0
>02_01_0077 -
546033-546223,546314-546566,546635-546865,547165-547331,
547369-548008
Length = 493
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Frame = -2
Query: 710 PPLRXRXHQPDHQIPDSI-HQPPQT*HPFPSIP*RRTRXEFAPGLKPPLSSEAPSAYLTP 534
PP P+ +PDS Q P T P P P ++ + + L P P + P
Sbjct: 50 PPSPGYSDSPEPPLPDSPPSQEPDTPEPAPPTPPQQQQQPWQSPLPPRREPAPPRTVVPP 109
Query: 533 SSLGMXKGVSPPYFQVN 483
G PP +N
Sbjct: 110 QEPGWSSVPPPPARVIN 126
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 87 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 188
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 79 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 225
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>06_01_1169 +
9996068-9996265,9996356-9998589,9998675-9998926,
9999007-9999117,9999207-9999288,9999563-9999754
Length = 1022
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -2
Query: 716 SHPPLRXRXHQPDHQIPDSIHQPP-QT*HPFPSIP*RRTRXEFAPGLKPPLSSEAPS 549
S PPLR QP P QPP T P + P T+ + AP PP+ + P+
Sbjct: 584 SPPPLRSPPRQPTPP-PSPSQQPPLPTPQPVQASPTSPTK-QHAPPAPPPVQTSPPT 638
>05_01_0492 - 4102379-4103494,4104105-4104383,4105395-4105724
Length = 574
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Frame = -2
Query: 719 SSHPPLRXRXHQPDHQIPDSIHQPPQT*HPFPSIP*--RRTRXEFAPGLKPPLSSEAPSA 546
S PP + +Q Q PP + +P ++P + E A PP S P+
Sbjct: 344 SQAPPAPPQHYQTPPQYAQYSQPPPASANPSTAVPPSVHQQPEEVAAPYGPPPQSYPPNV 403
Query: 545 YLTPSSLGMXKGVSPPYFQVN 483
L + G +PP++ N
Sbjct: 404 RLPSPYVPPPSGPAPPFYGPN 424
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Frame = -2
Query: 728 PYASSHPPLRXRXHQPDHQIPDSIHQPPQT*HPFPSIP*R--RTRXEFAPGLKPPLSSEA 555
P S +PP + HQ PP P P + +T ++A +PP +S
Sbjct: 316 PQESYYPPSAVQPTDTTHQ---QYQAPPAPQSQAPPAPPQHYQTPPQYAQYSQPPPASAN 372
Query: 554 PSAYLTPSSLGMXKGVSPPY 495
PS + PS + V+ PY
Sbjct: 373 PSTAVPPSVHQQPEEVAAPY 392
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -1
Query: 246 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 67
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 66 ILHSF 52
+LHSF
Sbjct: 1408 LLHSF 1412
>08_02_1615 + 28257275-28258428,28258523-28259144
Length = 591
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/62 (30%), Positives = 24/62 (38%)
Frame = -2
Query: 686 QPDHQIPDSIHQPPQT*HPFPSIP*RRTRXEFAPGLKPPLSSEAPSAYLTPSSLGMXKGV 507
QP H H PQ+ HP P P AP PP S P ++ + L K +
Sbjct: 32 QPPHSHLLHHHHSPQS-HPQPDAPAAAAPPPPAPLTPPPPKSPPPPPHIQTTDLPPPKPL 90
Query: 506 SP 501
P
Sbjct: 91 PP 92
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 448 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 359
+P++L+SPP T+ IED + + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,490,875
Number of Sequences: 37544
Number of extensions: 445306
Number of successful extensions: 1227
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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