Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_H18
         (804 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical...    29   2.9  
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    29   2.9  
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    29   5.1  

>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18b protein.
          Length = 1459

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -2

Query: 662  SIHQPPQT*HPFPSIP*RRTRXEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPP 498
            S+  PP    P P+    + R       + P+++EAP+A   PS   + +G SPP
Sbjct: 1173 SVIPPPILPPPPPAGVIGQQRNPIGGARQVPVAAEAPAAAAAPSRARVPRGPSPP 1227


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18a protein.
          Length = 1456

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -2

Query: 662  SIHQPPQT*HPFPSIP*RRTRXEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPP 498
            S+  PP    P P+    + R       + P+++EAP+A   PS   + +G SPP
Sbjct: 1173 SVIPPPILPPPPPAGVIGQQRNPIGGARQVPVAAEAPAAAAAPSRARVPRGPSPP 1227


>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
           protein T20D3.11 protein.
          Length = 1843

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 728 PYASSHPPLRXRXHQPDHQIPDS 660
           P +S HPPL    H  +H  PD+
Sbjct: 66  PTSSHHPPLNSSSHHSNHNYPDT 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,131,834
Number of Sequences: 27780
Number of extensions: 326732
Number of successful extensions: 931
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)