Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_H17
(775 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 143 3e-35
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 140 2e-34
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 42 1e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.3
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.2
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 6.9
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb... 25 9.1
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 143 bits (346), Expect = 3e-35
Identities = 67/102 (65%), Positives = 79/102 (77%)
Frame = -3
Query: 626 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 447
REPRL++V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+
Sbjct: 119 REPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWY 178
Query: 446 LLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 321
LLAREVLR+RG L R WDV+ DL+FYRDPEE E++E+ K
Sbjct: 179 LLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220
Score = 49.6 bits (113), Expect = 5e-07
Identities = 23/36 (63%), Positives = 26/36 (72%)
Frame = -1
Query: 775 IENPADXXVISSRPFGQRAVLKFAAHTRXYAYCGTF 668
IENPAD V+S+R +G RAVLKFAAHT A G F
Sbjct: 70 IENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRF 105
Score = 32.7 bits (71), Expect = 0.060
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -2
Query: 693 GXTXIAGRFTPGAFTNQIQAAF 628
G T IAGRFTPG FTN I +
Sbjct: 97 GATAIAGRFTPGNFTNYITRTY 118
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 140 bits (339), Expect = 2e-34
Identities = 66/100 (66%), Positives = 78/100 (78%)
Frame = -3
Query: 626 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 447
REPRL+IV DP D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+
Sbjct: 120 REPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWY 179
Query: 446 LLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 327
LLAREVLRLRG + R W+V+ DL+FYRDPEE E++E+Q
Sbjct: 180 LLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219
Score = 54.4 bits (125), Expect = 2e-08
Identities = 26/36 (72%), Positives = 27/36 (75%)
Frame = -1
Query: 775 IENPADXXVISSRPFGQRAVLKFAAHTRXYAYCGTF 668
IENPAD VISSRP+G RAVLKFAAHT A G F
Sbjct: 71 IENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRF 106
Score = 32.7 bits (71), Expect = 0.060
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -2
Query: 693 GXTXIAGRFTPGAFTNQIQAAF 628
G T IAGRFTPG FTN I +
Sbjct: 98 GATAIAGRFTPGNFTNYITRTY 119
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = -3
Query: 620 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 441
P L+++L+P ++ EA ++P I + +TD+ R V IP N S L+ LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239
Query: 440 AR 435
+R
Sbjct: 240 SR 241
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 572 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 462
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 464 IGLMWWLLAREVLRLRGVLPRDQRWD 387
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -1
Query: 409 FPVTSAGML--WLICSSTVTLKKVKRM 335
FP S ++ WL +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506
>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 401
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -1
Query: 763 ADXXVISSRPFGQRAVLKFAAHTRXYAYCGTFHTRCFY*PDPS 635
+D V+ RP + LK Y YC RC + P+P+
Sbjct: 151 SDTCVLLGRPLVSASALKLEGQLCIYNYCNGPCYRCMF-PNPT 192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,995,895
Number of Sequences: 5004
Number of extensions: 59408
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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