Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_H17
(775 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) 168 5e-42
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35) 36 0.036
SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20) 32 0.59
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037) 31 1.4
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5) 30 2.4
SB_25787| Best HMM Match : Asparaginase_2 (HMM E-Value=0.097) 29 3.2
SB_55321| Best HMM Match : Orn_DAP_Arg_deC (HMM E-Value=1.5) 29 3.2
SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032) 29 4.2
SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27) 29 4.2
SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15) 29 5.5
SB_47864| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11) 28 9.6
SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8) 28 9.6
>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
Length = 328
Score = 168 bits (408), Expect = 5e-42
Identities = 75/101 (74%), Positives = 86/101 (85%)
Frame = -3
Query: 626 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 447
REPRLLIV DP DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN K HSIGLM+W
Sbjct: 117 REPRLLIVCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFW 176
Query: 446 LLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQA 324
LLAREVLR+RG + R W+++ DL+FYRDPEE+EK+EQ A
Sbjct: 177 LLAREVLRMRGSISRALPWEIMPDLYFYRDPEEAEKEEQAA 217
Score = 50.4 bits (115), Expect = 2e-06
Identities = 22/36 (61%), Positives = 27/36 (75%)
Frame = -1
Query: 775 IENPADXXVISSRPFGQRAVLKFAAHTRXYAYCGTF 668
IENPAD VIS+RP+GQRA+LK+A+HT G F
Sbjct: 68 IENPADVCVISARPYGQRAILKYASHTGATPIAGRF 103
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/22 (86%), Positives = 19/22 (86%)
Frame = -2
Query: 693 GXTXIAGRFTPGAFTNQIQAAF 628
G T IAGRFTPG FTNQIQAAF
Sbjct: 95 GATPIAGRFTPGTFTNQIQAAF 116
>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1772
Score = 35.9 bits (79), Expect = 0.036
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +1
Query: 373 KSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDLVLHGIAMST-NLSGE---SVLHKA 540
K+TT RWS+G TP ++ H I L+ HG ST NL+ E VL++
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNEN 1453
Query: 541 ITGMLTY 561
G +TY
Sbjct: 1454 ELGTMTY 1460
>SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)
Length = 428
Score = 31.9 bits (69), Expect = 0.59
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -3
Query: 674 DVSHQVLLLTRSKLHSREPRLLIVLDPAQDHQPITEASYVNIPVIALC-NTDSPLRFVDI 498
++ +VL +L +++ +D A H P + +Y NI +I L NT S + +D
Sbjct: 240 EIMQEVLAKLNRRLKRENRNIMLFMDNAPCHTPSLKNTYCNIKIIFLSKNTTSKTQPLDS 299
Query: 497 AIPCNTK 477
I N K
Sbjct: 300 GIIANWK 306
>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
Length = 432
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = -3
Query: 602 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 507
LDP +HQPIT+ + I ++A TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 618 SSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHCYP 490
S+ DCI C+ PS F C+ +C T++C +C+P
Sbjct: 880 SANDCI-TCSDPSNALIGFTCKANCTPGQFKNTATRVCENCHP 921
>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
Length = 315
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 470 HSIGLMWWLLAREVLRLRGVLP 405
H G +WW+L E LR + VLP
Sbjct: 46 HDDGSVWWVLTSESLRAKAVLP 67
>SB_25787| Best HMM Match : Asparaginase_2 (HMM E-Value=0.097)
Length = 1623
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 179 VLQKQEPQRVQQAGRYLQPMKPLAPV 256
VL+ +P RV + R L P +PLAP+
Sbjct: 504 VLEMVDPDRVTDSSRSLAPAEPLAPI 529
>SB_55321| Best HMM Match : Orn_DAP_Arg_deC (HMM E-Value=1.5)
Length = 398
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 179 VLQKQEPQRVQQAGRYLQPMKPLAPV 256
VL+ +P RV + R L P +PLAP+
Sbjct: 145 VLEMVDPDRVTDSSRSLAPAEPLAPI 170
>SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)
Length = 397
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 621 TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHC 496
TSSLD + PC+ S H+ + + C C+ +++ C C
Sbjct: 331 TSSLDTLAPCSF-SCHFACDVNTNQCICYYGYQMSDNKCKAC 371
>SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)
Length = 418
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 368 RTNQPQHPSAGHGEA-HHEASTLHVPTTTTSNQ*SGKTWCC 487
R QP H ++ + A HH A LH P +TS + W C
Sbjct: 176 RDGQPCHGASMNNFAYHHAADFLHYPPVSTSYMPAHPYWTC 216
>SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +1
Query: 361 R*KNKSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDL---VLHGIAMSTNLSGESVL 531
R N+ T ++ STP + N+ ++P EW ++ H + L+GES
Sbjct: 3 RGSNRRPTFKYKFGDSSTPFYSALKKQNDRSMRPWEWHEMKARYSHAQTLINALTGESKY 62
Query: 532 HKAITG 549
+TG
Sbjct: 63 EFTLTG 68
>SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1601
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 412 TPRSLNTSRANNHHIKPIEWEDLVLHGIAMSTNLSGESVLH 534
T +SLN S N + P EW + V+ G+ LSG ++L+
Sbjct: 864 TAQSLNVSVDNLKFLAPTEWRE-VIPGLKQEILLSGSNMLN 903
>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
Length = 487
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 360 TVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVGR-LGVAWDSNVHK 509
+V Q+ + P +T HT+ T P HQ + +GR G DSNV +
Sbjct: 241 SVTNQMRGHEPRSITYNHTSITAPLTTGYPDHQGSYMGRYAGSVADSNVSR 291
>SB_47864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Frame = -3
Query: 713 EVCRAHPVXRXLRDVSHQVLLLTRSKLHSRE--PRLLIVLDPAQDHQPITEASYVNIP 546
++C P R LR V H L+ E P L + +P H+P T IP
Sbjct: 133 DMCERRPCHRYLRHVEHMTLMYLYEPCTEPEMIPELETITEPEIIHEPETIPGPETIP 190
>SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)
Length = 1702
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = -3
Query: 524 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQR 393
+SPL + I +PCNT +S+ W+LLA + ++ VL D R
Sbjct: 495 ESPLSYDLILVPCNTPNSNH----WFLLA-VLPHMKAVLLLDSR 533
>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 195 SCFWSTPCSRRMVCPGTR*VEHNCRRTSRRHRS 97
+C W+ P R+ PG R H T+R H +
Sbjct: 904 TCSWALPAHYRVHVPGQRSASHEAFDTTRPHEN 936
>SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8)
Length = 594
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = +1
Query: 394 RWSRGSTPRSLNTSRA---NNHHIKPIEWE-DLVLHGIAMSTNLSGESVLH 534
RWS +TPR TS N H+ P+ + D+ H A + +L S ++
Sbjct: 62 RWSHATTPRGGGTSSVLALNLAHVPPVSGDYDVAFHKHAAAVHLEDWSTIN 112
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,667,618
Number of Sequences: 59808
Number of extensions: 501442
Number of successful extensions: 1383
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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