BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_T7_H17 (775 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 144 8e-35 At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 137 7e-33 At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 113 1e-25 At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP... 32 0.37 At5g23690.1 68418.m02777 polynucleotide adenylyltransferase fami... 31 1.1 At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin fa... 29 4.5 At1g72710.1 68414.m08408 casein kinase, putative similar to case... 28 7.9 >At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical to laminin receptor-like protein GB:U01955 [Arabidopsis thaliana]; identical to cDNA laminin receptor homologue GI:16379 Length = 298 Score = 144 bits (348), Expect = 8e-35 Identities = 64/104 (61%), Positives = 81/104 (77%), Gaps = 1/104 (0%) Frame = -3 Query: 623 EPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWL 444 EPRLLI+ DP DHQPI E + NIP+IA C+TDSP+RFVDI IP N K HSIG ++WL Sbjct: 122 EPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWL 181 Query: 443 LAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESE-KDEQQAKEQ 315 LAR VL++RG + Q+WDV+VDLFFYR+PEE++ +DE +A Q Sbjct: 182 LARMVLQMRGTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQ 225 Score = 44.4 bits (100), Expect = 9e-05 Identities = 23/38 (60%), Positives = 26/38 (68%) Frame = -1 Query: 775 IENPADXXVISSRPFGQRAVLKFAAHTRXYAYCGTFHT 662 IENP D V S+RP+GQRAVLKFA +T A G HT Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGR-HT 108 Score = 34.3 bits (75), Expect = 0.091 Identities = 14/22 (63%), Positives = 16/22 (72%) Frame = -2 Query: 693 GXTXIAGRFTPGAFTNQIQAAF 628 G IAGR TPG FTNQ+Q +F Sbjct: 99 GANAIAGRHTPGTFTNQMQTSF 120 >At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical to p40 protein homolog GB:AAB67866 [Arabidopsis thaliana]; similar to 40S ribosomal protein SA (P40) GB:O65751 [Cicer arietinum] Length = 280 Score = 137 bits (332), Expect = 7e-33 Identities = 60/102 (58%), Positives = 77/102 (75%) Frame = -3 Query: 623 EPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWL 444 EPRLLI+ DP DHQPI E + NIP IA C+TDSP+ FVDI IP N K HSIG ++WL Sbjct: 123 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWL 182 Query: 443 LAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKE 318 LAR VL++RG + Q+WDV+VDLFFYR+PEE++++ + E Sbjct: 183 LARMVLQMRGTILAAQKWDVMVDLFFYREPEEAKQEGDEEAE 224 Score = 44.4 bits (100), Expect = 9e-05 Identities = 23/38 (60%), Positives = 26/38 (68%) Frame = -1 Query: 775 IENPADXXVISSRPFGQRAVLKFAAHTRXYAYCGTFHT 662 IENP D V S+RP+GQRAVLKFA +T A G HT Sbjct: 73 IENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGR-HT 109 Score = 34.3 bits (75), Expect = 0.091 Identities = 14/22 (63%), Positives = 16/22 (72%) Frame = -2 Query: 693 GXTXIAGRFTPGAFTNQIQAAF 628 G IAGR TPG FTNQ+Q +F Sbjct: 100 GVNAIAGRHTPGTFTNQMQTSF 121 >At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical to p40 protein homolog GB:AAB67866 [Arabidopsis thaliana]; similar to 40S ribosomal protein SA (P40) GB:O65751 [Cicer arietinum] Length = 332 Score = 113 bits (272), Expect = 1e-25 Identities = 50/83 (60%), Positives = 62/83 (74%) Frame = -3 Query: 623 EPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWL 444 EPRLLI+ DP DHQPI E + NIP IA C+TDSP+ FVDI IP N K HSIG ++WL Sbjct: 123 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWL 182 Query: 443 LAREVLRLRGVLPRDQRWDVVVD 375 LAR VL++RG + Q+WDV+V+ Sbjct: 183 LARMVLQMRGTILAAQKWDVMVN 205 Score = 44.4 bits (100), Expect = 9e-05 Identities = 23/38 (60%), Positives = 26/38 (68%) Frame = -1 Query: 775 IENPADXXVISSRPFGQRAVLKFAAHTRXYAYCGTFHT 662 IENP D V S+RP+GQRAVLKFA +T A G HT Sbjct: 73 IENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGR-HT 109 Score = 34.3 bits (75), Expect = 0.091 Identities = 14/22 (63%), Positives = 16/22 (72%) Frame = -2 Query: 693 GXTXIAGRFTPGAFTNQIQAAF 628 G IAGR TPG FTNQ+Q +F Sbjct: 100 GVNAIAGRHTPGTFTNQMQTSF 121 >At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2) identical to SP|Q9GCB9 Mitochondrial ribosomal protein S2 {Arabidopsis thaliana}; contains Pfam profile PF00318: ribosomal protein S2 Length = 219 Score = 32.3 bits (70), Expect = 0.37 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = -3 Query: 620 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 471 P ++V D + I EAS + IPV+A+ + + PL F + I P + S Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181 >At5g23690.1 68418.m02777 polynucleotide adenylyltransferase family protein low similarity to SP|P13685 Poly(A) polymerase (EC 2.7.7.19) {Escherichia coli O157:H7}; contains Pfam profile PF01743: polyA polymerase family protein Length = 527 Score = 30.7 bits (66), Expect = 1.1 Identities = 16/38 (42%), Positives = 24/38 (63%) Frame = -1 Query: 340 RMNNKPRNRLWYQLNQK*LLLSMKTGMKHWSQWLHGLK 227 +++++PR+R W QLN K L LS K + L+GLK Sbjct: 54 KVSDEPRDREWKQLNSKDLGLSSSMIAKSTRKVLNGLK 91 >At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin family protein contains Pfam domain, PF01190: Pollen proteins Ole e I family Length = 146 Score = 28.7 bits (61), Expect = 4.5 Identities = 12/46 (26%), Positives = 22/46 (47%) Frame = -3 Query: 524 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 387 D L ++A+ C TKS + + ++ V + +P +RWD Sbjct: 49 DHVLEGAEVAVLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWD 94 >At1g72710.1 68414.m08408 casein kinase, putative similar to casein kinase I, delta isoform [Arabidopsis thaliana] SWISS-PROT:P42158 Length = 465 Score = 27.9 bits (59), Expect = 7.9 Identities = 13/41 (31%), Positives = 20/41 (48%) Frame = +2 Query: 338 PFHFLQGHGRRTNQPQHPSAGHGEAHHEASTLHVPTTTTSN 460 P +FL G GRR NQ G + + +++ H+P N Sbjct: 131 PDNFLMGLGRRANQVYVIDFGLAKKYRDSNHQHIPYRENKN 171 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,156,831 Number of Sequences: 28952 Number of extensions: 330501 Number of successful extensions: 869 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 839 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 869 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1726528800 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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