Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_H16
(808 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 33 0.048
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.0
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 28 1.4
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 28 1.8
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 2.4
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 3.1
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 27 3.1
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 27 4.1
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 26 5.5
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce... 26 5.5
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 26 7.2
SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual 26 7.2
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha... 26 7.2
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy... 25 9.6
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 25 9.6
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 25 9.6
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 25 9.6
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 9.6
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 33.1 bits (72), Expect = 0.048
Identities = 23/72 (31%), Positives = 30/72 (41%)
Frame = -1
Query: 733 LAVSPLCIKPPSPAISXTSTRSSNPRFHTPTTPDLTSISINPPDAVLEGVRAGVKASVVI 554
LA S S IS +ST N FH PT TS S A +GV + S+ +
Sbjct: 790 LATSLYLSSSSSRTISTSSTNEYNTSFHAPTVSSTTSSSSTTSLAANKGVNSNSITSLNL 849
Query: 553 RGSISVSHPLVT 518
+ SV+ T
Sbjct: 850 ESTSSVTSTAYT 861
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 1.0
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -2
Query: 708 SHPPLRSRXHQPDHQIPDSIHQPPQT*HPFPSIPLTPY*KEFAPGLKPPL-SSEAPS 541
S PP+R + P + PP + P PS P P AP PPL +S APS
Sbjct: 1688 STPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP--PPPLPASSAPS 1742
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 99 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 227
R +A Y+ + LGG++ S+ EK F + N DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 27.9 bits (59), Expect = 1.8
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Frame = -1
Query: 751 HXFAXLLAVSPLCIKPPSPAISXTSTRSSN---PRFHTPTTPD------LTSISINPP 605
H A ++V P + P P+IS T+T SS H PTTPD LT + PP
Sbjct: 259 HGPAKQISVQPS--EHPKPSISTTTTGSSYRSAESSHAPTTPDHFKLTPLTKLEPQPP 314
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.5 bits (58), Expect = 2.4
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Frame = -2
Query: 663 IPDSIHQPPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPSAYLT--PSSLGMXKGVSPP 490
+P + PP PFP P P PP AP +Y T S+L GVS P
Sbjct: 525 VPPGMALPPGMPAPFPGYPAVPAMPGIPGATAPP---GAPGSYNTSESSNLNAPPGVSMP 581
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -3
Query: 254 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 159
CY P + + L ++I+T+L DN ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 27.1 bits (57), Expect = 3.1
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = -3
Query: 353 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 174
K K+ D V K + +S T+ +V + YF PF+ V+ +K + T
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664
Query: 173 LSASIQASLPSSEIYRQL 120
+ + SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 26.6 bits (56), Expect = 4.1
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +3
Query: 471 HHSLENKGAKPLXPCPVTRG*DTLMEPLMTTEALTPARTPSSTASGGLMEMDVKS 635
H S NK A P P ++ P A TP+ SS A GL E++ KS
Sbjct: 511 HTSSLNKVAAAPAPVPKPVNLKSVENPQNNISAPTPSSLQSSNAPVGLGEVESKS 565
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 464 KLRALLVVIPRILRSPPPTHPLIEDV 387
KLR++L I ++LR P P PL+ +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130
>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 170
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 152 SLPSSEIYRQLVDSRHVSSDSFGVY 78
+L S I+R + S HVSS S GVY
Sbjct: 2 TLLDSSIFRFRLSSLHVSSRSLGVY 26
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 88 KESEETWRESTNWR*ISEEG 147
KE E W + NW+ SEEG
Sbjct: 809 KEELEAWTRAFNWQKASEEG 828
>SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 131 YRQLVDSRHVSSDSFGVYVKS*SLILHSFGLLV 33
YRQLVD R ++ D F + K+ LH + V
Sbjct: 34 YRQLVDGRELTLDDFISHAKALRTHLHRLDINV 66
>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +3
Query: 492 GAKPLXPCPVTRG*DTLMEPLMTTEALTPARTPSSTASGGLMEMDVKSGV 641
G + + CP T+G +EP++ A+TP+S G+ + GV
Sbjct: 81 GGRVVHDCPTTKGIGYFLEPILILCLF--AKTPTSLTLTGVTSSNEDIGV 128
>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -3
Query: 329 LVTHKELALKVSSIIGTRVYVFDPSCY 249
+V H E LKV II T Y D S Y
Sbjct: 37 VVKHHEEFLKVCDIISTFTYQLDASIY 63
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = -1
Query: 694 AISXTSTRSSNPRFHTPTTPDLTSISINPPDAVLEGVRAGVKASV 560
A+ ++ S F PTT S+SI+P + V+A V
Sbjct: 69 AVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADV 113
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 469 ITSFAPY*SSFHAYSAPLLQLTPSSKTSS 383
+ SF PY S F A P L ++PS+ +S
Sbjct: 302 LQSFHPYESLFSAGQPPSLPISPSTSQNS 330
>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 719 LMHQATLPCDLGYINPIIKSPIPYTNHP 636
+ HQA L C GY + + +P+ N P
Sbjct: 348 ICHQAILRCIYGYYHNLSLEELPFINVP 375
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 9.6
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 114 IYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVV 215
++Q A+ LG RS RC KSSF+ + DVV
Sbjct: 33 LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,159,628
Number of Sequences: 5004
Number of extensions: 65065
Number of successful extensions: 228
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -