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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_H16
         (808 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)                      34   0.16 
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.36 
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      30   2.5  
SB_24975| Best HMM Match : ET (HMM E-Value=1)                          30   2.5  
SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07)          29   3.4  
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 29   3.4  
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)                   28   7.7  

>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1918

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 2/104 (1%)
 Frame = -2

Query: 789 TSQLKESMXXHPFIXSXYYWRSRPYASSHP--PLRSRXHQPDHQIPDSIHQPPQT*HPFP 616
           T ++ E++   P+  S +     P +  +P  P R+  H        S+   P + H  P
Sbjct: 38  TQEMSENVPTSPYKTSPFMPPQSPGSMQNPVSPHRTYQHNLPRGSQSSVPPSPHSYHSAP 97

Query: 615 SIPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPYF 484
           S         + PG   P S     +  TPSS+     +SP +F
Sbjct: 98  SPSRYAGPSAYMPGAISPSSGICTPSCATPSSVMSPGPISPDFF 141


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 3/106 (2%)
 Frame = -1

Query: 799  TTADVTVEGVNVXPPLHXFAXLLAVSPLCIKPPSPAISXTSTRSSNPRFHTPTTPDLTSI 620
            T ++ T+  V        FA   +VSP     P P I   ST +      + +T D    
Sbjct: 813  TDSESTIVPVTTVARESTFAPGTSVSPEITVAPGPTIGSESTVTRGATVASAST-DAPGT 871

Query: 619  SINPPDAVLEGVRAGVKASVVIRGSI---SVSHPLVTGHG*RGFAP 491
            +++P   V  G+ A  ++S+    ++   S + PL TG      AP
Sbjct: 872  TVSPESTVAPGIAAASESSITPGTTVLPESTAAPLTTGASESTVAP 917


>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2437

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -2

Query: 585  FAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQVNDESQASRLISR 442
            FA     P SS++PSA  +P+S       SP  F  + E +   +IS+
Sbjct: 1096 FATTTMSPTSSQSPSAVTSPTSPRSPSNPSPASFGFHSEDEPVTMISK 1143


>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -1

Query: 760 PPLHXFAXLLAVSPLCIKPPSPAIS-XTSTRSSNPRFHTPTTPDLTSISIN 611
           P L  +   +A++ + ++PP PAIS   S +S +P F  P T    S S++
Sbjct: 846 PKLPLYLHSIALTGIDLEPPPPAISKGLSLKSRDPNFIQPFTAPQKSRSLS 896


>SB_24975| Best HMM Match : ET (HMM E-Value=1)
          Length = 316

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -1

Query: 796 TADVTVEGVNVXP--PLHXFAXLLA-VSPLCIKPPSPAISXTSTRSSNPRFHTPTT 638
           +A VT   V+V P  PL   A + A VS     P SP+ S T++ S  P  HTP T
Sbjct: 114 SASVTAS-VSVTPNTPLSLSASVTASVSVTPNTPQSPSASVTASVSVTPNIHTPVT 168


>SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07)
          Length = 592

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
 Frame = -3

Query: 356 YKVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLK---DN 186
           + + + DN L T   L +K+    G   +VFD         FDT+    +R   +   DN
Sbjct: 313 HSLTMIDNEL-TGDPLDIKMFEATG---WVFDEPGE-DNKKFDTIAPSTVRPKTREMTDN 367

Query: 185 KTALLSASIQASLPSSEIYRQLVDSRHVSSDSFGVYVK 72
           +  L    I+    SS++ R  V +R + SD   VYVK
Sbjct: 368 QVPLEVGIIRQFPFSSDVQRMTVITRILGSDHMDVYVK 405


>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = -2

Query: 723  RPYASSHPPLRSRXHQPDHQIPDSIHQPPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAP 544
            +PY +  PP+ S  +Q    +P +    P    P   +P+    +   PG+  P +S  P
Sbjct: 905  QPYNTPMPPISSTPYQAPPTLPPTTLTTPSWSQP---VPVPSMYQPQPPGIMQPPTSIPP 961

Query: 543  SAYLTPSS 520
            S  + P S
Sbjct: 962  SQPMAPPS 969


>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 305

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
 Frame = -1

Query: 760 PPLHXFAXLLAVS-PLCIKPPSPAISXTSTRSSNPRFHTPTTPDLTSISINPPDAVLEGV 584
           PP+   A + A + PL    P P  S        P    P  P L   +  PP +VL   
Sbjct: 168 PPIAPAATVPAPAVPLAAASPPPP-SGGPPPPPPPPPPPPPPPILELAAPPPPGSVLGAA 226

Query: 583 RAGVKASVVIRGSISVSHPLVTGH 512
             G+K+ VV  G  S+    + GH
Sbjct: 227 LTGIKSGVVGGGGESLMDSFLLGH 250


>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 703 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPP 605
           P+PA + T T+ + P  HTPTTP  T+ +   P
Sbjct: 94  PTPATTPTPTKPT-PTAHTPTTPTPTAHTPTKP 125


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -2

Query: 639  PQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPP 490
            P T  P P +PL P      P   PP+ +  P+   TP++       +PP
Sbjct: 903  PTTPAPPPPLPLAPEPPPPLPPPPPPIQTTRPTVPTTPTTQASTTRPTPP 952


>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
          Length = 2748

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -1

Query: 646  PTTPDLTSISINPPDAVLEGVRAGVKASVVIRGSI--SVSHPLVTG 515
            PT+P++TS S  P     + ++AG +  VV+  ++  SV  P++ G
Sbjct: 1911 PTSPEMTSRSGQPFKRFTKHIKAGDRLRVVMGSTVLKSVLQPVIQG 1956


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,953,796
Number of Sequences: 59808
Number of extensions: 517761
Number of successful extensions: 1634
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1627
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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