Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_H16
(808 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0) 34 0.16
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.36
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) 30 2.5
SB_24975| Best HMM Match : ET (HMM E-Value=1) 30 2.5
SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07) 29 3.4
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 29 3.4
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35) 28 7.7
>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1918
Score = 33.9 bits (74), Expect = 0.16
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 2/104 (1%)
Frame = -2
Query: 789 TSQLKESMXXHPFIXSXYYWRSRPYASSHP--PLRSRXHQPDHQIPDSIHQPPQT*HPFP 616
T ++ E++ P+ S + P + +P P R+ H S+ P + H P
Sbjct: 38 TQEMSENVPTSPYKTSPFMPPQSPGSMQNPVSPHRTYQHNLPRGSQSSVPPSPHSYHSAP 97
Query: 615 SIPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPYF 484
S + PG P S + TPSS+ +SP +F
Sbjct: 98 SPSRYAGPSAYMPGAISPSSGICTPSCATPSSVMSPGPISPDFF 141
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 32.7 bits (71), Expect = 0.36
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 3/106 (2%)
Frame = -1
Query: 799 TTADVTVEGVNVXPPLHXFAXLLAVSPLCIKPPSPAISXTSTRSSNPRFHTPTTPDLTSI 620
T ++ T+ V FA +VSP P P I ST + + +T D
Sbjct: 813 TDSESTIVPVTTVARESTFAPGTSVSPEITVAPGPTIGSESTVTRGATVASAST-DAPGT 871
Query: 619 SINPPDAVLEGVRAGVKASVVIRGSI---SVSHPLVTGHG*RGFAP 491
+++P V G+ A ++S+ ++ S + PL TG AP
Sbjct: 872 TVSPESTVAPGIAAASESSITPGTTVLPESTAAPLTTGASESTVAP 917
>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2437
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -2
Query: 585 FAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQVNDESQASRLISR 442
FA P SS++PSA +P+S SP F + E + +IS+
Sbjct: 1096 FATTTMSPTSSQSPSAVTSPTSPRSPSNPSPASFGFHSEDEPVTMISK 1143
>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
Length = 2442
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -1
Query: 760 PPLHXFAXLLAVSPLCIKPPSPAIS-XTSTRSSNPRFHTPTTPDLTSISIN 611
P L + +A++ + ++PP PAIS S +S +P F P T S S++
Sbjct: 846 PKLPLYLHSIALTGIDLEPPPPAISKGLSLKSRDPNFIQPFTAPQKSRSLS 896
>SB_24975| Best HMM Match : ET (HMM E-Value=1)
Length = 316
Score = 29.9 bits (64), Expect = 2.5
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = -1
Query: 796 TADVTVEGVNVXP--PLHXFAXLLA-VSPLCIKPPSPAISXTSTRSSNPRFHTPTT 638
+A VT V+V P PL A + A VS P SP+ S T++ S P HTP T
Sbjct: 114 SASVTAS-VSVTPNTPLSLSASVTASVSVTPNTPQSPSASVTASVSVTPNIHTPVT 168
>SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07)
Length = 592
Score = 29.5 bits (63), Expect = 3.4
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = -3
Query: 356 YKVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLK---DN 186
+ + + DN L T L +K+ G +VFD FDT+ +R + DN
Sbjct: 313 HSLTMIDNEL-TGDPLDIKMFEATG---WVFDEPGE-DNKKFDTIAPSTVRPKTREMTDN 367
Query: 185 KTALLSASIQASLPSSEIYRQLVDSRHVSSDSFGVYVK 72
+ L I+ SS++ R V +R + SD VYVK
Sbjct: 368 QVPLEVGIIRQFPFSSDVQRMTVITRILGSDHMDVYVK 405
>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = -2
Query: 723 RPYASSHPPLRSRXHQPDHQIPDSIHQPPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAP 544
+PY + PP+ S +Q +P + P P +P+ + PG+ P +S P
Sbjct: 905 QPYNTPMPPISSTPYQAPPTLPPTTLTTPSWSQP---VPVPSMYQPQPPGIMQPPTSIPP 961
Query: 543 SAYLTPSS 520
S + P S
Sbjct: 962 SQPMAPPS 969
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 29.5 bits (63), Expect = 3.4
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Frame = -1
Query: 760 PPLHXFAXLLAVS-PLCIKPPSPAISXTSTRSSNPRFHTPTTPDLTSISINPPDAVLEGV 584
PP+ A + A + PL P P S P P P L + PP +VL
Sbjct: 168 PPIAPAATVPAPAVPLAAASPPPP-SGGPPPPPPPPPPPPPPPILELAAPPPPGSVLGAA 226
Query: 583 RAGVKASVVIRGSISVSHPLVTGH 512
G+K+ VV G S+ + GH
Sbjct: 227 LTGIKSGVVGGGGESLMDSFLLGH 250
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 703 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPP 605
P+PA + T T+ + P HTPTTP T+ + P
Sbjct: 94 PTPATTPTPTKPT-PTAHTPTTPTPTAHTPTKP 125
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -2
Query: 639 PQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPP 490
P T P P +PL P P PP+ + P+ TP++ +PP
Sbjct: 903 PTTPAPPPPLPLAPEPPPPLPPPPPPIQTTRPTVPTTPTTQASTTRPTPP 952
>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
Length = 2748
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = -1
Query: 646 PTTPDLTSISINPPDAVLEGVRAGVKASVVIRGSI--SVSHPLVTG 515
PT+P++TS S P + ++AG + VV+ ++ SV P++ G
Sbjct: 1911 PTSPEMTSRSGQPFKRFTKHIKAGDRLRVVMGSTVLKSVLQPVIQG 1956
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,953,796
Number of Sequences: 59808
Number of extensions: 517761
Number of successful extensions: 1634
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1627
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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