Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_H15
(806 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces pomb... 28 1.8
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 26 5.5
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 26 5.5
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 26 7.2
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 26 7.2
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 26 7.2
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 26 7.2
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 26 7.2
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni... 25 9.6
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ... 25 9.6
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 25 9.6
>SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 287
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = -3
Query: 462 LLMLADVRHDIQNIEARVYKDGEKLERFNLQKAWRRQRKQEKIDRDSRTE 313
LL+L V +I I + ++ E+L RFNL + +++ + I DS+ +
Sbjct: 222 LLILVQVIKNIIGIS--IVQNFEELRRFNLNEVYKQPENTKSIPNDSKLD 269
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 412 RLQRRRKAGTIQSPKGLAPPTQAGEN*PGQQNRT 311
++Q+++KA QSPK PP ++ P Q+ T
Sbjct: 309 QMQQQQKAQQQQSPKAQQPPAHLVQSAPVQRKTT 342
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 26.2 bits (55), Expect = 5.5
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Frame = -3
Query: 408 YKDGEKLERFNLQKAWRRQRKQEKIDRDSRT---EQELEAYTAPSVESPV-EISSRGRTG 241
Y+D E++ER QKA +E+ ++T E E+ A +V+ + + ++ G+ G
Sbjct: 207 YRDPEEIEREEEQKAAAAAAAEEEAQLAAQTAAAEFEVTDSAAGTVDPTILDNATAGQVG 266
Query: 240 EIRHDSTTDWSM 205
+ + +W++
Sbjct: 267 QTTWEGDAEWNI 278
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 25.8 bits (54), Expect = 7.2
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Frame = -3
Query: 441 RHDIQNIEARVYKDGEKLERFNLQKAWRRQRKQEKIDRDSRTEQELEAYTAPSVESPVEI 262
R D E K+ E R NL R+ RKQEK+ R EL + ++ES +
Sbjct: 265 RRDENTKEIEKLKEKEGSIRRNLLAFDRKVRKQEKLIASKR--PELISIAEKALESKSNL 322
Query: 261 SS-RGRTGEIRHDSTTDWSMVKG-DNDLEDLPLG---LMDDMKALERLR 130
+ + EI D + S ++ +N L L + DM+ E+L+
Sbjct: 323 RKIQRKAAEIEKDYSDQASTLQVLENQLTSLSAAEKEFLKDMQEKEQLK 371
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = -3
Query: 312 QELEAYTAPSVESPVEISSRGRTGEIRHDSTTD--WSMVKGDNDLEDLPLGLMDDMKALE 139
+++ T+ ++E+PV + + ++H++ TD + G+N L+ + K +
Sbjct: 554 KQMNHLTSENIETPVPVPNGNWYNGVKHETATDIFTTCHDGNNSLKSSVWKELLKEKHWK 613
Query: 138 RLRQYHVTGNSSKI 97
+ + +TGNS +I
Sbjct: 614 QESKPQLTGNSRQI 627
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 101 LEEFPVTWYCRSLSSAF 151
+E PV WYC S S+ F
Sbjct: 1 MESQPVIWYCHSCSNEF 17
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 597 KAGIVDASEDRGDHQGPPGMEGPKG 523
+ IVDA E+ GPPGM G G
Sbjct: 553 ECAIVDAPEESKAPAGPPGMGGMGG 577
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/43 (30%), Positives = 28/43 (65%)
Frame = -3
Query: 429 QNIEARVYKDGEKLERFNLQKAWRRQRKQEKIDRDSRTEQELE 301
+ I A+ K+ EKLE+ ++ +++RK+E+ D+ R ++E +
Sbjct: 117 EKIAAKKMKELEKLEKERIRLQEQQRRKEER-DQKLREKEEAQ 158
>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 25.4 bits (53), Expect = 9.6
Identities = 16/65 (24%), Positives = 32/65 (49%)
Frame = +1
Query: 472 EGSFRTTCAPRSSRSSITFGSLHARRSLVVPSVLARIDNTRLPTEPLRQVLYMRNCLRHR 651
+G FR+ P S + R L + + +A + + L ++PL + Y+++C R+
Sbjct: 133 QGHFRSIAVPSCSDQDM--------RQLYMATTIASLLDFSL-SDPLCSIQYIKSCQRYE 183
Query: 652 SSFSI 666
FS+
Sbjct: 184 GGFSL 188
>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 296
Score = 25.4 bits (53), Expect = 9.6
Identities = 24/72 (33%), Positives = 33/72 (45%)
Frame = -3
Query: 429 QNIEARVYKDGEKLERFNLQKAWRRQRKQEKIDRDSRTEQELEAYTAPSVESPVEISSRG 250
Q IE VY G+K++ KA R K E TE+ + A S + PV++S G
Sbjct: 7 QKIE-NVYLLGKKID-----KAKRMANKGESNTNMLSTEENIVKAKAVSRKKPVDVSYAG 60
Query: 249 RTGEIRHDSTTD 214
RH+S D
Sbjct: 61 LA---RHESHVD 69
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -1
Query: 608 GSVGRRVLSMRARTEGTTKDRRAWRDPKVILEREDLGAHVVL 483
G++G+ V + R E + D + WR + ILE +++
Sbjct: 480 GNIGQAVDRVEQRVEMISDDSKKWRRVEEILESNRFSPPIII 521
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,496
Number of Sequences: 5004
Number of extensions: 47839
Number of successful extensions: 153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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