Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_H15
(806 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0121 + 4502628-4502696,4503727-4503829,4504205-4504328,450... 31 1.1
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 31 1.4
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 30 1.9
11_01_0570 - 4529901-4529962,4530725-4530800,4531247-4531306,453... 30 2.5
07_03_1311 + 25687434-25687884,25689313-25689566,25689632-256902... 29 3.3
06_02_0107 - 11904636-11904699,11904940-11905013,11905671-119058... 29 4.4
08_02_0163 + 13470178-13470335,13470635-13470656,13470885-134710... 29 5.8
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815... 29 5.8
>09_02_0121 +
4502628-4502696,4503727-4503829,4504205-4504328,
4505963-4506306,4506383-4506487,4507907-4508288,
4509173-4509437,4509936-4510094,4511150-4511201,
4511266-4511462,4512865-4513350,4513797-4514093
Length = 860
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +3
Query: 516 QYHLWVPPCPAVLGGPLGPRSHRQYPPSNGAVASSTLY 629
QY L+VPP P P P + YPP + AVA Y
Sbjct: 659 QYPLYVPPQPLHFMVPQPPSTGGMYPPVSAAVAPPGKY 696
>02_05_0702 -
31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 30.7 bits (66), Expect = 1.4
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Frame = -3
Query: 453 LADVRHDIQNIEARVYKDGEKLERFNLQKAWRRQRKQEKI----DRDSRTEQEL----EA 298
LA++R + EAR+ +LER + + +R +E++ R S E+EL +A
Sbjct: 207 LAELRKSNMDEEARMSAKVAELERETSESSSSLRRSKERVSELEQRVSYMEKELCSTKDA 266
Query: 297 YTAPSVESPVEISSRGRTGEIRHDSTTDWSMVKGD 193
A E+S+ + E+ +S+ +WS G+
Sbjct: 267 AAANEQRLAAELSTVMKLAELHKESSEEWSKKAGE 301
>05_07_0112 -
27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/46 (28%), Positives = 28/46 (60%)
Frame = -3
Query: 444 VRHDIQNIEARVYKDGEKLERFNLQKAWRRQRKQEKIDRDSRTEQE 307
+ +++ E R+ K+ EK + N ++ + +R+ E+ DR+ R E+E
Sbjct: 439 IAKEVEAHEKRIRKELEKQDMLNRKREEQVRREMERNDRERRKEEE 484
>11_01_0570 -
4529901-4529962,4530725-4530800,4531247-4531306,
4533797-4533959,4534037-4534091,4534314-4534366,
4534881-4534980,4535556-4535703,4535964-4536056
Length = 269
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 425 TLRRAFTKTEKSWNDSISKRLGAANASRRKLTG 327
T + F T SW + + LG A A R++LTG
Sbjct: 152 TCKGGFIPTALSWEEEEADTLGQAGAGRKRLTG 184
>07_03_1311 +
25687434-25687884,25689313-25689566,25689632-25690252,
25690684-25690836
Length = 492
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = -2
Query: 433 HTEH*GARLQRRRKAGTIQSPKGLAPPTQAGE 338
HTE ARL R R A + GL PP Q E
Sbjct: 26 HTEFNRARLLRSRGAAAVAGADGLPPPGQPAE 57
>06_02_0107 - 11904636-11904699,11904940-11905013,11905671-11905802,
11910309-11911018,11911110-11911852,11911936-11913753,
11914037-11914338
Length = 1280
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 611 NGSVGRRVLSMRARTEGTTKDRRAWRDPKVILERE 507
NGS R+LS+ A+ G+ D A+ DP + ++E
Sbjct: 941 NGSTNLRILSLLAKVSGSDND--AYNDPSLTFKKE 973
>08_02_0163 +
13470178-13470335,13470635-13470656,13470885-13471055,
13471157-13471363,13471458-13471700
Length = 266
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 608 GSVGRRVLSMRARTEGTTKDRRAWRDP 528
G VG R R EG T+DR W+ P
Sbjct: 33 GCVGGRPPQSRVEAEGKTRDRWGWQQP 59
>01_06_0213 +
27580635-27581105,27581206-27581298,27581376-27581540,
27581640-27581862,27582329-27582429,27582666-27582713,
27583086-27583172,27583745-27583879,27583985-27584140,
27585336-27585545,27585641-27586351,27586429-27586974,
27587872-27588495,27588595-27588699,27590460-27590711,
27590939-27591766
Length = 1584
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/48 (25%), Positives = 28/48 (58%)
Frame = -3
Query: 450 ADVRHDIQNIEARVYKDGEKLERFNLQKAWRRQRKQEKIDRDSRTEQE 307
A + +++ E R+ K+ EK + ++ + +++ E+ DR+ R E+E
Sbjct: 162 AKIAKEVEAHERRIRKELEKQDMMKRKREEQMRKEMERHDRERRKEEE 209
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,584,371
Number of Sequences: 37544
Number of extensions: 377157
Number of successful extensions: 1248
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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