Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_H15
         (806 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical pr...    33   0.24 
Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical pr...    33   0.24 
AC025716-19|AAK39602.2|  549|Caenorhabditis elegans Hypothetical...    31   0.97 
U28739-1|AAK68186.2|  339|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z92784-5|CAB07196.3|  554|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z66495-15|CAH04728.1|  303|Caenorhabditis elegans Hypothetical p...    29   3.0  
Z49936-8|CAH10798.1|  303|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog...    29   3.9  
AF408755-1|AAO27834.1|  360|Caenorhabditis elegans unknown prote...    29   3.9  
AF047651-4|AAK67208.2|  516|Caenorhabditis elegans Hypothetical ...    29   3.9  
AF047651-3|AAZ82848.1|  515|Caenorhabditis elegans Hypothetical ...    29   3.9  
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro...    29   3.9  
Z72508-8|CAA96640.2|  366|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AF067616-11|AAC19194.2|  627|Caenorhabditis elegans Collagen pro...    28   6.8  
Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical pr...    28   9.0  
AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.      28   9.0  
AF070070-1|AAC70065.1|  933|Caenorhabditis elegans MutS homolog ...    28   9.0  

>Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical
           protein F58H1.1b protein.
          Length = 1145

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 18/73 (24%), Positives = 35/73 (47%)
 Frame = -3

Query: 447 DVRHDIQNIEARVYKDGEKLERFNLQKAWRRQRKQEKIDRDSRTEQELEAYTAPSVESPV 268
           D+R  I N+E    ++G  ++R  L++  +R + ++ +D D   E+  E       +   
Sbjct: 42  DLRRKIGNLEHVAEENGRTIDR--LEQEVQRAKAEKSVDFDEEKEKTEEKEVEKEEKEVA 99

Query: 267 EISSRGRTGEIRH 229
            +  RG  GE+ H
Sbjct: 100 PVPVRGNRGEMAH 112


>Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical
           protein F58H1.1a protein.
          Length = 1143

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 18/73 (24%), Positives = 35/73 (47%)
 Frame = -3

Query: 447 DVRHDIQNIEARVYKDGEKLERFNLQKAWRRQRKQEKIDRDSRTEQELEAYTAPSVESPV 268
           D+R  I N+E    ++G  ++R  L++  +R + ++ +D D   E+  E       +   
Sbjct: 40  DLRRKIGNLEHVAEENGRTIDR--LEQEVQRAKAEKSVDFDEEKEKTEEKEVEKEEKEVA 97

Query: 267 EISSRGRTGEIRH 229
            +  RG  GE+ H
Sbjct: 98  PVPVRGNRGEMAH 110


>AC025716-19|AAK39602.2|  549|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.17 protein.
          Length = 549

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +3

Query: 486 DHVRPEVLSLQYHLWVPPCPAVLGGPLGPRSHRQYPPSNGAVASSTLYA*LPSPP 650
           D ++ E   + YH+ VPP P  +  P+ P  +  YP +  A      YA  P PP
Sbjct: 299 DLMKKEEPDVVYHMAVPPPP--IPPPIQPPPYSYYPVAPAAAPQVYHYAPPPPPP 351


>U28739-1|AAK68186.2|  339|Caenorhabditis elegans Hypothetical
           protein C17G10.3 protein.
          Length = 339

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 22/87 (25%), Positives = 42/87 (48%)
 Frame = -3

Query: 378 NLQKAWRRQRKQEKIDRDSRTEQELEAYTAPSVESPVEISSRGRTGEIRHDSTTDWSMVK 199
           +L KA R+++  +   RD ++ +       PSV    E SSR +   IR     ++S+ K
Sbjct: 50  DLSKAERKEKNNKTARRDVKSSRGNVKTMKPSVVKAEERSSRSKK-SIREGKLKNFSLPK 108

Query: 198 GDNDLEDLPLGLMDDMKALERLRQYHV 118
            ++++  L L   D  K+   + +Y +
Sbjct: 109 DESEITALQLD-ADLTKSARLMEEYKI 134


>Z92784-5|CAB07196.3|  554|Caenorhabditis elegans Hypothetical
           protein F31C3.6a protein.
          Length = 554

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/68 (29%), Positives = 34/68 (50%)
 Frame = -3

Query: 459 LMLADVRHDIQNIEARVYKDGEKLERFNLQKAWRRQRKQEKIDRDSRTEQELEAYTAPSV 280
           +++ DV ++I  +EA V    +       + + R ++K     R+SR E E +  TAP  
Sbjct: 384 VIIEDVENEIDYVEA-VEGPVDIASSATPESSPRSEQKSVDSGRESRDESEEDEETAPGT 442

Query: 279 ESPVEISS 256
           E   EIS+
Sbjct: 443 EGQKEIST 450


>Z66495-15|CAH04728.1|  303|Caenorhabditis elegans Hypothetical
           protein F13B10.2d protein.
          Length = 303

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 434 TYRTLRRAFTKTEKSWNDSISKRLGAANASRRK 336
           TYR   +AFTK  K W D   K+L  A+ ++ K
Sbjct: 24  TYRGRIKAFTKYAKKWQDEDGKKLIEADFAKLK 56


>Z49936-8|CAH10798.1|  303|Caenorhabditis elegans Hypothetical
           protein F13B10.2d protein.
          Length = 303

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 434 TYRTLRRAFTKTEKSWNDSISKRLGAANASRRK 336
           TYR   +AFTK  K W D   K+L  A+ ++ K
Sbjct: 24  TYRGRIKAFTKYAKKWQDEDGKKLIEADFAKLK 56


>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
           domain protein 1 protein.
          Length = 1346

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 396 EKLERFNLQKAWRRQRKQEKIDRDSRTEQELE 301
           E++ER   Q   RR+R++E+ +R  R E+E E
Sbjct: 463 EEIERMRQQAEERRRREREEEERRKREEEEAE 494


>AF408755-1|AAO27834.1|  360|Caenorhabditis elegans unknown protein
           protein.
          Length = 360

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = +1

Query: 538 HARRSLVVPSVLARIDNTRLPTEPLRQVLYMRNCLRHRSSFSIG 669
           H   SLV  S+   ID++ +P+EP ++ +++   + HR+S  +G
Sbjct: 153 HRTNSLVYDSMPELIDSSNMPSEPPKKKIHLE--VGHRNSEMVG 194


>AF047651-4|AAK67208.2|  516|Caenorhabditis elegans Hypothetical
           protein C05D2.6a protein.
          Length = 516

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = +1

Query: 538 HARRSLVVPSVLARIDNTRLPTEPLRQVLYMRNCLRHRSSFSIG 669
           H   SLV  S+   ID++ +P+EP ++ +++   + HR+S  +G
Sbjct: 309 HRTNSLVYDSMPELIDSSNMPSEPPKKKIHLE--VGHRNSEMVG 350


>AF047651-3|AAZ82848.1|  515|Caenorhabditis elegans Hypothetical
           protein C05D2.6b protein.
          Length = 515

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = +1

Query: 538 HARRSLVVPSVLARIDNTRLPTEPLRQVLYMRNCLRHRSSFSIG 669
           H   SLV  S+   ID++ +P+EP ++ +++   + HR+S  +G
Sbjct: 308 HRTNSLVYDSMPELIDSSNMPSEPPKKKIHLE--VGHRNSEMVG 349


>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
           protein.
          Length = 1346

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 396 EKLERFNLQKAWRRQRKQEKIDRDSRTEQELE 301
           E++ER   Q   RR+R++E+ +R  R E+E E
Sbjct: 463 EEIERMRQQAEERRRREREEEERRKREEEEAE 494


>Z72508-8|CAA96640.2|  366|Caenorhabditis elegans Hypothetical
           protein F28H7.9 protein.
          Length = 366

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/57 (26%), Positives = 33/57 (57%)
 Frame = -3

Query: 474 LDLMLLMLADVRHDIQNIEARVYKDGEKLERFNLQKAWRRQRKQEKIDRDSRTEQEL 304
           LDL      ++ +  +NIE++VY D  +L+R   ++A ++ +K+ +    + +E E+
Sbjct: 310 LDLRTTFGEEMNYSDKNIESKVYFD--QLQRNLTEEAMKKSKKKHRSSSWNNSEHEI 364


>AF067616-11|AAC19194.2|  627|Caenorhabditis elegans Collagen
           protein 99 protein.
          Length = 627

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -3

Query: 591 GIVDASEDRGDHQ--GPPGMEGPKGD 520
           G   +  DRG+    GPPG  GPKGD
Sbjct: 123 GTPGSKGDRGERGPLGPPGFPGPKGD 148


>Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical
           protein F09E8.3 protein.
          Length = 1369

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
 Frame = -3

Query: 357 RQRKQEKIDRDSRTEQELEAYTAPSVESPVEISSRGRTGEIRHDSTTDWSMVKG-DNDLE 181
           R   QEKI  D  TE+     T P+ +S +  S+   T E       +    +G    L 
Sbjct: 131 RYDPQEKIYEDGTTEEGTSEDTVPTWDSSLAYSTDETTAEKEEKEEDEDDDDEGLPAKLN 190

Query: 180 DLPLGLMDDMKALERLRQYHVTGNSS 103
            LP       +A+ERL+    + +SS
Sbjct: 191 KLPNNFFRMSRAIERLKAMAGSHDSS 216


>AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.
          Length = 1369

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
 Frame = -3

Query: 357 RQRKQEKIDRDSRTEQELEAYTAPSVESPVEISSRGRTGEIRHDSTTDWSMVKG-DNDLE 181
           R   QEKI  D  TE+     T P+ +S +  S+   T E       +    +G    L 
Sbjct: 131 RYDPQEKIYEDGTTEEGTSEDTVPTWDSSLAYSTDETTAEKEEKEEDEDDDDEGLPAKLN 190

Query: 180 DLPLGLMDDMKALERLRQYHVTGNSS 103
            LP       +A+ERL+    + +SS
Sbjct: 191 KLPNNFFRMSRAIERLKAMAGSHDSS 216


>AF070070-1|AAC70065.1|  933|Caenorhabditis elegans MutS homolog
           protein.
          Length = 933

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
 Frame = -3

Query: 357 RQRKQEKIDRDSRTEQELEAYTAPSVESPVEISSRGRTGEIRHDSTTDWSMVKG-DNDLE 181
           R   QEKI  D  TE+     T P+ +S +  S+   T E       +    +G    L 
Sbjct: 131 RYDPQEKIYEDGTTEEGTSEDTVPTWDSSLAYSTDETTAEKEEKEEDEDDDDEGLPAKLN 190

Query: 180 DLPLGLMDDMKALERLRQYHVTGNSS 103
            LP       +A+ERL+    + +SS
Sbjct: 191 KLPNNFFRMSRAIERLKAMAGSHDSS 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,813,609
Number of Sequences: 27780
Number of extensions: 292593
Number of successful extensions: 1757
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1751
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)