Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_H15
         (806 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   1.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.5  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   5.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   5.8  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   7.7  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   7.7  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = -3

Query: 627 IEYLTQRLRWKAG----IVDASEDRGDHQGPPGMEGPKGD 520
           + Y+ +R++ +      I ++ +   ++ GPPG+ G  GD
Sbjct: 304 VGYMAKRIQMRKNRFQKIAESMKTARENPGPPGVPGDHGD 343


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = -3

Query: 627 IEYLTQRLRWKAG----IVDASEDRGDHQGPPGMEGPKGD 520
           + Y+ +R++ +      I ++ +   ++ GPPG+ G  GD
Sbjct: 304 VGYMAKRIQMRKNRFQKIAESMKTARENPGPPGVPGDHGD 343


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = -3

Query: 627 IEYLTQRLRWKAG----IVDASEDRGDHQGPPGMEGPKGD 520
           + Y+ +R++ +      I ++ +   ++ GPPG+ G  GD
Sbjct: 243 VGYMAKRIQMRKNRFQKIAESMKTARENPGPPGVPGDHGD 282


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 209 DQSVVESWRISPVRPREDISTGLSTDGA 292
           D SVV S R SP+ P  +IS    + G+
Sbjct: 284 DSSVVGSPRDSPIEPEIEISQNSVSTGS 311


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 431 YRTLRRAFTKTEKSWNDSIS 372
           Y+T+ R   +T   W+DS+S
Sbjct: 408 YQTMSRDPARTPFQWDDSVS 427


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 431 YRTLRRAFTKTEKSWNDSIS 372
           Y+T+ R   +T   W+DS+S
Sbjct: 408 YQTMSRDPARTPFQWDDSVS 427


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 447 DVRHDIQNIEARVYKDGEKLERFNLQKAWRRQRKQEKI 334
           +V + IQNI   +    EK+ R+ ++     Q+K  K+
Sbjct: 54  NVHNHIQNIFKIIKSTNEKITRYIIRMFLISQQKTSKL 91


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 447 DVRHDIQNIEARVYKDGEKLERFNLQKAWRRQRKQEKI 334
           +V + IQNI   +    EK+ R+ ++     Q+K  K+
Sbjct: 37  NVHNHIQNIFKIIKSTNEKITRYIIRMFLISQQKTSKL 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,261
Number of Sequences: 438
Number of extensions: 3580
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)