Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_H15
         (806 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16780.1 68418.m01965 SART-1 family protein contains Pfam dom...    35   0.073
At4g40010.1 68417.m05665 serine/threonine protein kinase, putati...    32   0.52 
At5g48060.1 68418.m05938 C2 domain-containing protein contains I...    30   1.6  
At3g05420.2 68416.m00594 acyl-CoA binding family protein similar...    30   1.6  
At3g05420.1 68416.m00593 acyl-CoA binding family protein similar...    30   1.6  
At1g57700.1 68414.m06548 protein kinase family protein contains ...    29   2.7  
At5g58320.2 68418.m07301 kinase interacting protein-related low ...    29   3.6  
At4g14410.2 68417.m02224 basic helix-loop-helix (bHLH) family pr...    29   4.8  
At4g14410.1 68417.m02223 basic helix-loop-helix (bHLH) family pr...    29   4.8  
At1g76770.1 68414.m08934 heat shock protein-related contains sim...    29   4.8  
At3g07220.1 68416.m00861 transcriptional activator, putative sim...    28   6.3  
At2g23980.1 68415.m02863 cyclic nucleotide-regulated ion channel...    28   6.3  
At2g15270.1 68415.m01741 expressed protein                             28   6.3  
At4g36550.1 68417.m05190 U-box domain-containing protein low sim...    28   8.4  
At4g25550.1 68417.m03683 expressed protein                             28   8.4  

>At5g16780.1 68418.m01965 SART-1 family protein contains Pfam
           domain, PF03343: SART-1 family
          Length = 820

 Score = 34.7 bits (76), Expect = 0.073
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = -3

Query: 453 LADVRHDIQNIEARVYKDGEKLERFNLQKAWRRQRKQEKI-DRDSRTEQELEAYTAPSVE 277
           + + R D +    R ++DG + E+ +  K   +   +EKI D+D R ++E E     S +
Sbjct: 12  IREERADYEGSPVREHRDGRRKEKDHRSKDKEKDYDREKIRDKDHRRDKEKERDRKRSRD 71

Query: 276 SPVEIS-SRGRTGEIRHDSTTD 214
              E   SRGR  E   D + D
Sbjct: 72  EDTEKEISRGRDKEREKDKSRD 93


>At4g40010.1 68417.m05665 serine/threonine protein kinase, putative
           similar to serine-threonine protein kinase [Triticum
           aestivum] gi|2055374|gb|AAB58348
          Length = 350

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = -3

Query: 348 KQEKIDRDSRTEQELEAYTAPSVESPVEISSRGRTGEIRHDSTTDWSMVKGDNDLEDL 175
           ++EK D     E+E E     SVE  V+I    R G    D+     ++ G  DL+D+
Sbjct: 270 EEEKCDNGVEEEEEEEEKCRQSVEEIVKIIEEARKGVNGTDNNGGLGLIDGSIDLDDI 327


>At5g48060.1 68418.m05938 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1036

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
 Frame = -3

Query: 411 VYKDGEKLERFNLQKAWRRQRKQEKIDRD--SRTEQELEAYTAPS--VESPVEISSRGRT 244
           VYKD +  +RF L+K W     + +I       + +E + +  PS    SP + S+ G T
Sbjct: 100 VYKDDQVYQRFTLEKKWLLSSVKGEIGLKFYISSSEEDQTFPLPSKPYTSPTQASASG-T 158

Query: 243 GEIRHDSTTDWSM 205
            E   DS T+ S+
Sbjct: 159 EEDTADSETEDSL 171


>At3g05420.2 68416.m00594 acyl-CoA binding family protein similar to
           PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
           discoideum); contains Pfam profiles PF00887: Acyl CoA
           binding protein, PF01344: Kelch motif
          Length = 669

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 294 TAPSVESPVEISSRGRTGEIRHDSTTDWSMVKGDND 187
           T   +ES VE+S  GR  EI  D+    S V+G+++
Sbjct: 510 TTRDIESEVEVSQEGRVREIVMDNVNPGSKVEGNSE 545


>At3g05420.1 68416.m00593 acyl-CoA binding family protein similar to
           PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
           discoideum); contains Pfam profiles PF00887: Acyl CoA
           binding protein, PF01344: Kelch motif
          Length = 668

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 294 TAPSVESPVEISSRGRTGEIRHDSTTDWSMVKGDND 187
           T   +ES VE+S  GR  EI  D+    S V+G+++
Sbjct: 509 TTRDIESEVEVSQEGRVREIVMDNVNPGSKVEGNSE 544


>At1g57700.1 68414.m06548 protein kinase family protein contains
           Serine/Threonine protein kinases active-site signature,
           PROSITE:PS00108
          Length = 686

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = -3

Query: 372 QKAWRRQRKQEKIDRDSRTEQELEAYTAPSVESPVEISSRGRTGEIRHDSTTDWSMVKGD 193
           ++A RR+    K +   R  +E +A  APS  + +  S + R GE    S ++    +GD
Sbjct: 452 EEARRRKGSSSKQNEQKRLARESKAVPAPSANAELLASIQKRLGETNRTSISEKFNPEGD 511

Query: 192 N 190
           +
Sbjct: 512 S 512


>At5g58320.2 68418.m07301 kinase interacting protein-related low
           similarity to kinase interacting protein 1 [Petunia
           integrifolia] GI:13936326
          Length = 558

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
 Frame = -3

Query: 450 ADVRHDIQNI-EARVYKDGEKLE-RFNLQ--KAWRRQRKQEKIDRDSRTEQELEAYTAPS 283
           A V+ DI  + E ++++D +  E   N++  +  RR+   EKI+ + + + E+E  T   
Sbjct: 404 AQVKADIAKLLEEKIHRDDQFKELEANVRYLEDERRKVNNEKIEEEEKLKSEIEVLTLEK 463

Query: 282 VESP--VEISSRGRTGEIRHDSTTDWSMVKGDND 187
           VE    +E  SR +  E+  + +   S +K  +D
Sbjct: 464 VEKGRCIETLSR-KVSELESEISRLGSEIKARDD 496


>At4g14410.2 68417.m02224 basic helix-loop-helix (bHLH) family
           protein
          Length = 277

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = -3

Query: 474 LDLMLLMLADVRHDIQNIEARVYKDGEKLERFNLQKAWRRQRKQE-KIDRDSRTEQELEA 298
           LD  + +L  +R +   +E    K  E+++    +K   R+ K   K D++ +TEQ+L++
Sbjct: 165 LDDAIRILNQLRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLKADKE-KTEQQLKS 223

Query: 297 YTAPS 283
            TAPS
Sbjct: 224 MTAPS 228


>At4g14410.1 68417.m02223 basic helix-loop-helix (bHLH) family
           protein
          Length = 283

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = -3

Query: 474 LDLMLLMLADVRHDIQNIEARVYKDGEKLERFNLQKAWRRQRKQE-KIDRDSRTEQELEA 298
           LD  + +L  +R +   +E    K  E+++    +K   R+ K   K D++ +TEQ+L++
Sbjct: 171 LDDAIRILNQLRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLKADKE-KTEQQLKS 229

Query: 297 YTAPS 283
            TAPS
Sbjct: 230 MTAPS 234


>At1g76770.1 68414.m08934 heat shock protein-related contains
           similarity to 17.9 kDa heat-shock protein [Helianthus
           annuus] gi|11990130|emb|CAB55634
          Length = 244

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = -3

Query: 399 GEKLERFNLQKAWRRQRKQEKIDRDSRTEQELEAYTAPSVES-PVEISSRGRTGEIRHDS 223
           G K+E  + ++  +    +EK +  +  E+E++  T P  E+   E   R    E+  + 
Sbjct: 134 GLKIEEEDEEEEMKEPIVEEKTEEKTEPEEEIKEETKPEEENEEAEEPQREEEEEVVEEG 193

Query: 222 TTDWSMVKGDNDLEDLP 172
           T D    K + ++ED P
Sbjct: 194 TRDHE-GKKEEEIEDKP 209


>At3g07220.1 68416.m00861 transcriptional activator, putative
           similar to transcriptional activator FHA1 [Nicotiana
           tabacum] gi|15705932|gb|AAL05884
          Length = 320

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 537 PCPAVLGGPLGPRSH 581
           P  ++LGGPLGPR H
Sbjct: 116 PVRSILGGPLGPRHH 130


>At2g23980.1 68415.m02863 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC6) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc6) GI:4581207 from [Arabidopsis thaliana]
          Length = 747

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -3

Query: 375 LQKAWRRQRKQEKIDRDSRTEQELEAYTA 289
           +Q AWRR  K++K+++  + E+E EA  A
Sbjct: 657 MQAAWRRYIKRKKLEQLRKEEEEEEAAAA 685


>At2g15270.1 68415.m01741 expressed protein
          Length = 194

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/61 (31%), Positives = 33/61 (54%)
 Frame = -3

Query: 396 EKLERFNLQKAWRRQRKQEKIDRDSRTEQELEAYTAPSVESPVEISSRGRTGEIRHDSTT 217
           EK  +  L++  ++Q+KQEK  + + TE+E++    P V    EISS     E+  +S  
Sbjct: 125 EKTSKKRLKRQKKKQKKQEKKQKPNTTEEEVK---QPRVG---EISSDEGEDEVEEESVL 178

Query: 216 D 214
           +
Sbjct: 179 E 179


>At4g36550.1 68417.m05190 U-box domain-containing protein low
           similarity to immediate-early fungal elicitor protein
           CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 577

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 483 KGSLDLMLLMLADVRHDIQNIEARVYK 403
           KG LDL+L  L+  R  I+++E  V+K
Sbjct: 300 KGGLDLLLAFLSGNRRAIESLEEEVFK 326


>At4g25550.1 68417.m03683 expressed protein
          Length = 200

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +1

Query: 112 PGHVVLPQPLQRLHVVHEAQRQVFKV 189
           P H+  P+  +RL++VH ++++ F V
Sbjct: 133 PPHITKPKECKRLYIVHLSEKEYFAV 158


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,116,850
Number of Sequences: 28952
Number of extensions: 274088
Number of successful extensions: 900
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)