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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_H14
         (802 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               148   6e-36
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)                   36   0.029
SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   1.4  
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)           31   1.4  
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)                  30   2.5  
SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)                 29   4.4  
SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)                   29   5.8  
SB_22492| Best HMM Match : ANF_receptor (HMM E-Value=9.3e-05)          29   5.8  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  148 bits (358), Expect = 6e-36
 Identities = 75/140 (53%), Positives = 89/140 (63%)
 Frame = -1

Query: 790 VXAIENPXXVXVXSSRPXRSACCTEVCRAHRXYAYCGTFHTRCFY*XRSKLHSREXRLLI 611
           +  IENP  V V S+RP       +           G F    F   + +   RE RLLI
Sbjct: 65  IVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFT-NQIQAAFREPRLLI 123

Query: 610 VLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVL 431
           V DP  DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN K  HSIGLM+WLLAREVL
Sbjct: 124 VCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAREVL 183

Query: 430 RLRGVLPRDQRWDVVVDLFF 371
           R+RG + R   W+++ DL+F
Sbjct: 184 RMRGSISRALPWEIMPDLYF 203


>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1772

 Score = 36.3 bits (80), Expect = 0.029
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +3

Query: 378  KSTTTSQRWSRGSTPRSLSTSRANNHHIKPIEWEDLVLHGIAMST-NLSGE---SVLHKA 545
            K+TT   RWS+G TP      ++   H   I    L+ HG   ST NL+ E    VL++ 
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNEN 1453

Query: 546  ITGMLTY 566
              G +TY
Sbjct: 1454 ELGTMTY 1460


>SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +3

Query: 363 HG*KNKSTTTSQRWSRGSTPRSLSTSRANNHHIKPIEWEDL---VLHGIAMSTNLSGESV 533
           H   N+  T   ++   STP   +  + N+  ++P EW ++     H   +   L+GES 
Sbjct: 2   HRGSNRRPTFKYKFGDSSTPFYSALKKQNDRSMRPWEWHEMKARYSHAQTLINALTGESK 61

Query: 534 LHKAITG 554
               +TG
Sbjct: 62  YEFTLTG 68


>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
          Length = 432

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = -1

Query: 607 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 512
           LDP  +HQPIT+ +   I ++A   TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 623  SSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHCYP 495
            S+ DCI  C+ PS     F C+ +C         T++C +C+P
Sbjct: 880  SANDCI-TCSDPSNALIGFTCKANCTPGQFKNTATRVCENCHP 921


>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
          Length = 315

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 475 HSIGLMWWLLAREVLRLRGVLP 410
           H  G +WW+L  E LR + VLP
Sbjct: 46  HDDGSVWWVLTSESLRAKAVLP 67


>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 198  SCFWSTPCSRRMVCPGTR*VEHNCRRTSRRHRSA 97
            +C W+ P   R+  PG R   H    T+R H +A
Sbjct: 904  TCSWALPAHYRVHVPGQRSASHEAFDTTRPHENA 937


>SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)
          Length = 397

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 626 TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHC 501
           TSSLD + PC+  S H+   +  + C C+  +++    C  C
Sbjct: 331 TSSLDTLAPCSF-SCHFACDVNTNQCICYYGYQMSDNKCKAC 371


>SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)
          Length = 428

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -1

Query: 631 REXR-LLIVLDPAQDHQPITEASYVNIPVIALC-NTDSPLRFVDIAIPCNTK 482
           RE R +++ +D A  H P  + +Y NI +I L  NT S  + +D  I  N K
Sbjct: 255 RENRNIMLFMDNAPCHTPSLKNTYCNIKIIFLSKNTTSKTQPLDSGIIANWK 306


>SB_22492| Best HMM Match : ANF_receptor (HMM E-Value=9.3e-05)
          Length = 542

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = -1

Query: 418 VLPRDQRWDVVVDLFFXP*XLKKVKRMNNKPRNRL 314
           VL R++ WDVVVD  F P    K+ RM + PR  L
Sbjct: 182 VLAREKEWDVVVDRLFPP--DNKMPRMIS-PRQEL 213


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,392,847
Number of Sequences: 59808
Number of extensions: 447699
Number of successful extensions: 920
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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