Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_H14
(802 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) 148 6e-36
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35) 36 0.029
SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037) 31 1.4
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5) 30 2.5
SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032) 29 4.4
SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20) 29 5.8
SB_22492| Best HMM Match : ANF_receptor (HMM E-Value=9.3e-05) 29 5.8
>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
Length = 328
Score = 148 bits (358), Expect = 6e-36
Identities = 75/140 (53%), Positives = 89/140 (63%)
Frame = -1
Query: 790 VXAIENPXXVXVXSSRPXRSACCTEVCRAHRXYAYCGTFHTRCFY*XRSKLHSREXRLLI 611
+ IENP V V S+RP + G F F + + RE RLLI
Sbjct: 65 IVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFT-NQIQAAFREPRLLI 123
Query: 610 VLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVL 431
V DP DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN K HSIGLM+WLLAREVL
Sbjct: 124 VCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAREVL 183
Query: 430 RLRGVLPRDQRWDVVVDLFF 371
R+RG + R W+++ DL+F
Sbjct: 184 RMRGSISRALPWEIMPDLYF 203
>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1772
Score = 36.3 bits (80), Expect = 0.029
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +3
Query: 378 KSTTTSQRWSRGSTPRSLSTSRANNHHIKPIEWEDLVLHGIAMST-NLSGE---SVLHKA 545
K+TT RWS+G TP ++ H I L+ HG ST NL+ E VL++
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNEN 1453
Query: 546 ITGMLTY 566
G +TY
Sbjct: 1454 ELGTMTY 1460
>SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +3
Query: 363 HG*KNKSTTTSQRWSRGSTPRSLSTSRANNHHIKPIEWEDL---VLHGIAMSTNLSGESV 533
H N+ T ++ STP + + N+ ++P EW ++ H + L+GES
Sbjct: 2 HRGSNRRPTFKYKFGDSSTPFYSALKKQNDRSMRPWEWHEMKARYSHAQTLINALTGESK 61
Query: 534 LHKAITG 554
+TG
Sbjct: 62 YEFTLTG 68
>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
Length = 432
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = -1
Query: 607 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 512
LDP +HQPIT+ + I ++A TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -3
Query: 623 SSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHCYP 495
S+ DCI C+ PS F C+ +C T++C +C+P
Sbjct: 880 SANDCI-TCSDPSNALIGFTCKANCTPGQFKNTATRVCENCHP 921
>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
Length = 315
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 475 HSIGLMWWLLAREVLRLRGVLP 410
H G +WW+L E LR + VLP
Sbjct: 46 HDDGSVWWVLTSESLRAKAVLP 67
>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 198 SCFWSTPCSRRMVCPGTR*VEHNCRRTSRRHRSA 97
+C W+ P R+ PG R H T+R H +A
Sbjct: 904 TCSWALPAHYRVHVPGQRSASHEAFDTTRPHENA 937
>SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)
Length = 397
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 626 TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHC 501
TSSLD + PC+ S H+ + + C C+ +++ C C
Sbjct: 331 TSSLDTLAPCSF-SCHFACDVNTNQCICYYGYQMSDNKCKAC 371
>SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)
Length = 428
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -1
Query: 631 REXR-LLIVLDPAQDHQPITEASYVNIPVIALC-NTDSPLRFVDIAIPCNTK 482
RE R +++ +D A H P + +Y NI +I L NT S + +D I N K
Sbjct: 255 RENRNIMLFMDNAPCHTPSLKNTYCNIKIIFLSKNTTSKTQPLDSGIIANWK 306
>SB_22492| Best HMM Match : ANF_receptor (HMM E-Value=9.3e-05)
Length = 542
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = -1
Query: 418 VLPRDQRWDVVVDLFFXP*XLKKVKRMNNKPRNRL 314
VL R++ WDVVVD F P K+ RM + PR L
Sbjct: 182 VLAREKEWDVVVDRLFPP--DNKMPRMIS-PRQEL 213
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,392,847
Number of Sequences: 59808
Number of extensions: 447699
Number of successful extensions: 920
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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