BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_T7_H14 (802 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) 148 6e-36 SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35) 36 0.029 SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4 SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037) 31 1.4 SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9 SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5) 30 2.5 SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3 SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032) 29 4.4 SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20) 29 5.8 SB_22492| Best HMM Match : ANF_receptor (HMM E-Value=9.3e-05) 29 5.8 >SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) Length = 328 Score = 148 bits (358), Expect = 6e-36 Identities = 75/140 (53%), Positives = 89/140 (63%) Frame = -1 Query: 790 VXAIENPXXVXVXSSRPXRSACCTEVCRAHRXYAYCGTFHTRCFY*XRSKLHSREXRLLI 611 + IENP V V S+RP + G F F + + RE RLLI Sbjct: 65 IVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFT-NQIQAAFREPRLLI 123 Query: 610 VLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVL 431 V DP DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN K HSIGLM+WLLAREVL Sbjct: 124 VCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAREVL 183 Query: 430 RLRGVLPRDQRWDVVVDLFF 371 R+RG + R W+++ DL+F Sbjct: 184 RMRGSISRALPWEIMPDLYF 203 >SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35) Length = 1772 Score = 36.3 bits (80), Expect = 0.029 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%) Frame = +3 Query: 378 KSTTTSQRWSRGSTPRSLSTSRANNHHIKPIEWEDLVLHGIAMST-NLSGE---SVLHKA 545 K+TT RWS+G TP ++ H I L+ HG ST NL+ E VL++ Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNEN 1453 Query: 546 ITGMLTY 566 G +TY Sbjct: 1454 ELGTMTY 1460 >SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 179 Score = 30.7 bits (66), Expect = 1.4 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Frame = +3 Query: 363 HG*KNKSTTTSQRWSRGSTPRSLSTSRANNHHIKPIEWEDL---VLHGIAMSTNLSGESV 533 H N+ T ++ STP + + N+ ++P EW ++ H + L+GES Sbjct: 2 HRGSNRRPTFKYKFGDSSTPFYSALKKQNDRSMRPWEWHEMKARYSHAQTLINALTGESK 61 Query: 534 LHKAITG 554 +TG Sbjct: 62 YEFTLTG 68 >SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037) Length = 432 Score = 30.7 bits (66), Expect = 1.4 Identities = 15/32 (46%), Positives = 22/32 (68%) Frame = -1 Query: 607 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 512 LDP +HQPIT+ + I ++A TD+PL+F Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147 >SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1300 Score = 30.3 bits (65), Expect = 1.9 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = -3 Query: 623 SSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHCYP 495 S+ DCI C+ PS F C+ +C T++C +C+P Sbjct: 880 SANDCI-TCSDPSNALIGFTCKANCTPGQFKNTATRVCENCHP 921 >SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5) Length = 315 Score = 29.9 bits (64), Expect = 2.5 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -1 Query: 475 HSIGLMWWLLAREVLRLRGVLP 410 H G +WW+L E LR + VLP Sbjct: 46 HDDGSVWWVLTSESLRAKAVLP 67 >SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 987 Score = 29.5 bits (63), Expect = 3.3 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = -2 Query: 198 SCFWSTPCSRRMVCPGTR*VEHNCRRTSRRHRSA 97 +C W+ P R+ PG R H T+R H +A Sbjct: 904 TCSWALPAHYRVHVPGQRSASHEAFDTTRPHENA 937 >SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032) Length = 397 Score = 29.1 bits (62), Expect = 4.4 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = -3 Query: 626 TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHC 501 TSSLD + PC+ S H+ + + C C+ +++ C C Sbjct: 331 TSSLDTLAPCSF-SCHFACDVNTNQCICYYGYQMSDNKCKAC 371 >SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20) Length = 428 Score = 28.7 bits (61), Expect = 5.8 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = -1 Query: 631 REXR-LLIVLDPAQDHQPITEASYVNIPVIALC-NTDSPLRFVDIAIPCNTK 482 RE R +++ +D A H P + +Y NI +I L NT S + +D I N K Sbjct: 255 RENRNIMLFMDNAPCHTPSLKNTYCNIKIIFLSKNTTSKTQPLDSGIIANWK 306 >SB_22492| Best HMM Match : ANF_receptor (HMM E-Value=9.3e-05) Length = 542 Score = 28.7 bits (61), Expect = 5.8 Identities = 17/35 (48%), Positives = 21/35 (60%) Frame = -1 Query: 418 VLPRDQRWDVVVDLFFXP*XLKKVKRMNNKPRNRL 314 VL R++ WDVVVD F P K+ RM + PR L Sbjct: 182 VLAREKEWDVVVDRLFPP--DNKMPRMIS-PRQEL 213 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,392,847 Number of Sequences: 59808 Number of extensions: 447699 Number of successful extensions: 920 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 836 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 916 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2215746665 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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