Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_H12
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    30   0.43 
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...    27   2.3  
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    26   7.0  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    26   7.0  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    26   7.0  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    26   7.0  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    25   9.3  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   9.3  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    25   9.3  

>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
            Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +2

Query: 440  RTRHPTAPTGDERELRARAAHSAFFAVKPKRD 535
            R RHP    G +REL  RA  S +F    KRD
Sbjct: 1034 RYRHPVVSCGRKRELILRALCSGYFTNVAKRD 1065


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 407 PPDQQPSTGHPRTRHPTAPTGDERELRARAAHSAFFAVKPKRD 535
           P +  P+T H R   PTAP     E R RA+  A +    K+D
Sbjct: 83  PAEVVPAT-HKRQVRPTAPRAGRPEPRERASADAGYRRAEKKD 124


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 422 AVGPVVRRRKVA-PVHRSRCVSETTSCGIFPGMECRPIN 309
           A   V+  RK+A P  R R  S  +S GIF  +  +P++
Sbjct: 31  ASADVMATRKIAKPKSRKRPTSGVSSPGIFANLAAKPVS 69


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +3

Query: 150 FLTGDYALKKAREALAPQNDYRLNPIEPHHSDSTKPTVPHSARRRLAVAGT 302
           F +G ++  +    L P    RLNP+ P  +    P++P    + +  +GT
Sbjct: 75  FQSGPFSKSRRENTLLP----RLNPLAPIGARQPNPSIPQQFSKPINESGT 121


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 147 QFLTGDYALKKAREALAPQNDYRLNPIEP 233
           + +TGDY  ++  + L    +Y +N IEP
Sbjct: 579 KLITGDYEDRRFNDGLIKIREYLVNDIEP 607


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
 Frame = +2

Query: 452 PTAPTGDERELRARAAHSAFFAVKPKRDPLPFAL-LSLTERHDQVAKPGHGLPKNXGPLX 628
           PT  + DE             + + + +    AL +S  ER++ +  P H  PK   P  
Sbjct: 529 PTENSADETYTCEECEQKITLSERNEHEDYHIALSISRKERYNNLVPPSHDKPKQVKPKT 588

Query: 629 CGR 637
            GR
Sbjct: 589 YGR 591


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 255 VSWSRSGGARWGLVGSRSAGQ 193
           ++W+   G RW L GS  +G+
Sbjct: 283 INWTIREGERWALTGSNGSGK 303


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
 Frame = +2

Query: 134 PSPPPISHRRLRLEKGARSTCPA------ERLPTKPHRAPPLRLHETHGTAQCAPKARRR 295
           P P P S + LRL    RS  P+       R P+  H + P  L    G  +  P    R
Sbjct: 329 PLPAPTSSQSLRLGSLHRSRSPSPRSGRPRRSPSPSHLSIPSTLPPADGVPKPTPDGFPR 388

Query: 296 RY 301
           R+
Sbjct: 389 RF 390


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 382 TGATLRRLTTGPTAEYRAPPHP 447
           TG TLRR ++G TA  R   HP
Sbjct: 55  TGDTLRRQSSGATALERLVSHP 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,355
Number of Sequences: 5004
Number of extensions: 59550
Number of successful extensions: 185
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)