BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_T7_H12 (785 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 30 0.43 SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa... 27 2.3 SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 26 7.0 SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 26 7.0 SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 26 7.0 SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 26 7.0 SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 25 9.3 SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 9.3 SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 25 9.3 >SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosaccharomyces pombe|chr 1|||Manual Length = 1168 Score = 29.9 bits (64), Expect = 0.43 Identities = 15/32 (46%), Positives = 17/32 (53%) Frame = +2 Query: 440 RTRHPTAPTGDERELRARAAHSAFFAVKPKRD 535 R RHP G +REL RA S +F KRD Sbjct: 1034 RYRHPVVSCGRKRELILRALCSGYFTNVAKRD 1065 >SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosaccharomyces pombe|chr 1|||Manual Length = 144 Score = 27.5 bits (58), Expect = 2.3 Identities = 16/43 (37%), Positives = 21/43 (48%) Frame = +2 Query: 407 PPDQQPSTGHPRTRHPTAPTGDERELRARAAHSAFFAVKPKRD 535 P + P+T H R PTAP E R RA+ A + K+D Sbjct: 83 PAEVVPAT-HKRQVRPTAPRAGRPEPRERASADAGYRRAEKKD 124 >SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe|chr 3|||Manual Length = 565 Score = 25.8 bits (54), Expect = 7.0 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = -1 Query: 422 AVGPVVRRRKVA-PVHRSRCVSETTSCGIFPGMECRPIN 309 A V+ RK+A P R R S +S GIF + +P++ Sbjct: 31 ASADVMATRKIAKPKSRKRPTSGVSSPGIFANLAAKPVS 69 >SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2|||Manual Length = 1157 Score = 25.8 bits (54), Expect = 7.0 Identities = 13/51 (25%), Positives = 24/51 (47%) Frame = +3 Query: 150 FLTGDYALKKAREALAPQNDYRLNPIEPHHSDSTKPTVPHSARRRLAVAGT 302 F +G ++ + L P RLNP+ P + P++P + + +GT Sbjct: 75 FQSGPFSKSRRENTLLP----RLNPLAPIGARQPNPSIPQQFSKPINESGT 121 >SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 910 Score = 25.8 bits (54), Expect = 7.0 Identities = 10/29 (34%), Positives = 17/29 (58%) Frame = +3 Query: 147 QFLTGDYALKKAREALAPQNDYRLNPIEP 233 + +TGDY ++ + L +Y +N IEP Sbjct: 579 KLITGDYEDRRFNDGLIKIREYLVNDIEP 607 >SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizosaccharomyces pombe|chr 2|||Manual Length = 872 Score = 25.8 bits (54), Expect = 7.0 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 1/63 (1%) Frame = +2 Query: 452 PTAPTGDERELRARAAHSAFFAVKPKRDPLPFAL-LSLTERHDQVAKPGHGLPKNXGPLX 628 PT + DE + + + + AL +S ER++ + P H PK P Sbjct: 529 PTENSADETYTCEECEQKITLSERNEHEDYHIALSISRKERYNNLVPPSHDKPKQVKPKT 588 Query: 629 CGR 637 GR Sbjct: 589 YGR 591 >SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr 1|||Manual Length = 487 Score = 25.4 bits (53), Expect = 9.3 Identities = 8/21 (38%), Positives = 13/21 (61%) Frame = -3 Query: 255 VSWSRSGGARWGLVGSRSAGQ 193 ++W+ G RW L GS +G+ Sbjct: 283 INWTIREGERWALTGSNGSGK 303 >SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 620 Score = 25.4 bits (53), Expect = 9.3 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 6/62 (9%) Frame = +2 Query: 134 PSPPPISHRRLRLEKGARSTCPA------ERLPTKPHRAPPLRLHETHGTAQCAPKARRR 295 P P P S + LRL RS P+ R P+ H + P L G + P R Sbjct: 329 PLPAPTSSQSLRLGSLHRSRSPSPRSGRPRRSPSPSHLSIPSTLPPADGVPKPTPDGFPR 388 Query: 296 RY 301 R+ Sbjct: 389 RF 390 >SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 678 Score = 25.4 bits (53), Expect = 9.3 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = +1 Query: 382 TGATLRRLTTGPTAEYRAPPHP 447 TG TLRR ++G TA R HP Sbjct: 55 TGDTLRRQSSGATALERLVSHP 76 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,914,355 Number of Sequences: 5004 Number of extensions: 59550 Number of successful extensions: 185 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 165 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 184 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 381366860 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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