Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_H12
(785 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.065
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.15
SB_379| Best HMM Match : ADK (HMM E-Value=3.2e-05) 34 0.15
SB_22890| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00078) 32 0.61
SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_34170| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5) 30 2.4
SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10) 29 3.2
SB_20563| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_58632| Best HMM Match : Flp_Fap (HMM E-Value=1.1) 29 4.3
SB_26888| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_24017| Best HMM Match : DUF646 (HMM E-Value=4.1) 29 4.3
SB_8656| Best HMM Match : Chorion_3 (HMM E-Value=2.4) 29 4.3
SB_39424| Best HMM Match : Pox_A32 (HMM E-Value=0.033) 29 4.3
SB_57266| Best HMM Match : POPLD (HMM E-Value=0.55) 29 5.6
SB_46006| Best HMM Match : MAAL_N (HMM E-Value=3.7) 29 5.6
SB_33346| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_57323| Best HMM Match : ShTK (HMM E-Value=0) 29 5.6
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_27312| Best HMM Match : Pox_A32 (HMM E-Value=0.012) 28 7.5
SB_19217| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3) 28 9.9
SB_38456| Best HMM Match : BTB (HMM E-Value=8.8e-26) 28 9.9
SB_30592| Best HMM Match : MAM (HMM E-Value=2.66247e-44) 28 9.9
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 35.1 bits (77), Expect = 0.065
Identities = 36/143 (25%), Positives = 53/143 (37%), Gaps = 5/143 (3%)
Frame = +2
Query: 122 KSRGPSPPPISHRRLRLEKGARSTCPAERLPTKPHRAPPLRLHETHGTAQCAPKARRRRY 301
+ R PSPPP RR S P+ R P +PP R + +P RRRR
Sbjct: 887 RRRSPSPPPRRRRR-------DSYSPSRRRRDSPTPSPPPR--RRRKSPSPSPPRRRRRS 937
Query: 302 PSC**DGTPSPGKXXXXXXXXXXXXGAQEPP-----CAASPPDQQPSTGHPRTRHPTAPT 466
PS +P P + P ASP +Q + R +P+
Sbjct: 938 PS----NSPPPMRSSPLPPPQRKRASTPPSPRRARRKVASPEEQDRQKSNGRNSRSVSPS 993
Query: 467 GDERELRARAAHSAFFAVKPKRD 535
+R ++ + S + P+RD
Sbjct: 994 AVKRTKGSKRSESRSVSRSPERD 1016
Score = 29.5 bits (63), Expect = 3.2
Identities = 28/127 (22%), Positives = 35/127 (27%)
Frame = +3
Query: 174 KKAREALAPQNDYRLNPIEPHHSDSTKPTVPHSARRRLAVAGTHPVNRTALHPRENPAGR 353
++ R P R + P PT RRR P R P +P
Sbjct: 886 RRRRSPSPPPRRRRRDSYSPSRRRRDSPTPSPPPRRRRKSPSPSPPRRRRRSPSNSPPPM 945
Query: 354 RLGDTP*AVHRSHLAPPHHRTNSRVPGTPAPGTRQPLREMNGXXXXXXXXXXXXXXXRRG 533
R P + PP R R +P RQ N R
Sbjct: 946 RSSPLPPPQRKRASTPPSPRRARRKVASPEEQDRQKSNGRNSRSVSPSAVKRTKGSKRSE 1005
Query: 534 IHSLSRS 554
S+SRS
Sbjct: 1006 SRSVSRS 1012
Score = 29.5 bits (63), Expect = 3.2
Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 7/109 (6%)
Frame = +2
Query: 134 PSPPPISHRRLRLEKGARSTCPAERLPTK--PHRAPPLRLHETHGTAQCAPKARRRRYPS 307
PSP R R RS P +R P + P +PP R ++ + RRR
Sbjct: 1073 PSPRRTPEDRRRSRGSRRSPSPPKREPRRRSPSASPPRREARKRSLSRSPKREVRRR--- 1129
Query: 308 C**DGTPSPGKXXXXXXXXXXXXGAQE-PPCAA---SP-PDQQPSTGHP 439
G+PSP + G +E PPC A SP D++P+ P
Sbjct: 1130 ----GSPSPSE--GRKKPVDVEMGEEEAPPCKAARKSPSADEEPAEEAP 1172
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 33.9 bits (74), Expect = 0.15
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 383 QEPPCAASPPDQQPSTGHPRTRHP--TAPTGDERELRARA 496
QEPP + P QQ GHP TR P TAPT ++ ARA
Sbjct: 1727 QEPP--SRPDPQQVGRGHPSTREPQRTAPTPRTQQPPARA 1764
>SB_379| Best HMM Match : ADK (HMM E-Value=3.2e-05)
Length = 991
Score = 33.9 bits (74), Expect = 0.15
Identities = 17/79 (21%), Positives = 35/79 (44%)
Frame = +3
Query: 192 LAPQNDYRLNPIEPHHSDSTKPTVPHSARRRLAVAGTHPVNRTALHPRENPAGRRLGDTP 371
+ P+++ I+P H+ + P R + H +NRT + P N R+
Sbjct: 896 IEPEHNMNRTRIKPEHNMNRTRIEPEHNMNRTRIKPEHNMNRTRIEPEHNMNRTRIKPEH 955
Query: 372 *AVHRSHLAPPHHRTNSRV 428
++R+ + P H+ +R+
Sbjct: 956 -NMNRTRIKPEHNMNRTRI 973
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = +3
Query: 183 REALAPQNDYRLNPIEPHHSDSTKPTVPHSARRRLAVAGTHPVNRTALHPREN 341
R + P+++ IEP H+ + P R + H +NRT + P N
Sbjct: 904 RTRIKPEHNMNRTRIEPEHNMNRTRIKPEHNMNRTRIEPEHNMNRTRIKPEHN 956
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = +3
Query: 183 REALAPQNDYRLNPIEPHHSDSTKPTVPHSARRRLAVAGTHPVNRTALHPREN 341
R + P+++ I+P H+ + P R + H +NRT + P N
Sbjct: 915 RTRIEPEHNMNRTRIKPEHNMNRTRIEPEHNMNRTRIKPEHNMNRTRIKPEHN 967
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/53 (24%), Positives = 22/53 (41%)
Frame = +3
Query: 183 REALAPQNDYRLNPIEPHHSDSTKPTVPHSARRRLAVAGTHPVNRTALHPREN 341
R + P+++ IEP H+ + P R + H +NRT + N
Sbjct: 926 RTRIKPEHNMNRTRIEPEHNMNRTRIKPEHNMNRTRIKPEHNMNRTRIEAERN 978
>SB_22890| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00078)
Length = 788
Score = 31.9 bits (69), Expect = 0.61
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +3
Query: 132 VLHLPQFLTG---DYALKKAREALAPQNDYRLNPIEPHHSDSTKPTVPHS 272
+ +P FL+ DY LKKA++A +D L+PI + + T HS
Sbjct: 412 IFEIPNFLSDEECDYILKKAKKAGMHSSDIHLDPITDKYKKMIRSTEGHS 461
>SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1289
Score = 31.5 bits (68), Expect = 0.80
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 425 STGHPRTRHPTAPTGDERELRARAAHSAFF---AVKPKRDPLPFALLSLT 565
+ GHPR +H T P G +RE+R++A+ +A P PL A S+T
Sbjct: 94 AVGHPRVQHVTDP-GIDREVRSKASATARVHAEGAAPAPSPLMHAAHSMT 142
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/85 (23%), Positives = 38/85 (44%)
Frame = +3
Query: 201 QNDYRLNPIEPHHSDSTKPTVPHSARRRLAVAGTHPVNRTALHPRENPAGRRLGDTP*AV 380
+ +++ +P+ H S S +P + +RR + + H + +P RR +P
Sbjct: 185 EEEHKESPVH-HRSLSPEPRRGYRDQRRRSHSPAHHRRSRSRSRSRSPRRRRRSRSPRRR 243
Query: 381 HRSHLAPPHHRTNSRVPGTPAPGTR 455
RS PHHR++ + +P R
Sbjct: 244 RRSRSPSPHHRSHRSRSRSRSPRRR 268
>SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2409
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 122 KSRGPSPPPISHRRLRLEKGARSTCPAERLPTKPHRAPPLRLHETHGT 265
K +GP P+ L ++GAR + R PT P L + +T T
Sbjct: 1432 KHKGPKSDPVKSTTLSEDEGARPLDDSNRTPTSPAAPKTLWMDQTQPT 1479
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 30.3 bits (65), Expect = 1.8
Identities = 32/116 (27%), Positives = 37/116 (31%), Gaps = 6/116 (5%)
Frame = +2
Query: 134 PSPPPISHRRLR--LEKGARSTCPAERLPTKPHRAP----PLRLHETHGTAQCAPKARRR 295
P P + H R+R P R+P P RAP P R + G +Q P
Sbjct: 300 PPPQYMPHPRMRPPTRIPPPGMGPPPRIPPPPIRAPVDVYPPRAPQ--GASQTPP----- 352
Query: 296 RYPSC**DGTPSPGKXXXXXXXXXXXXGAQEPPCAASPPDQQPSTGHPRTRHPTAP 463
YP P P PP A P P HPR P AP
Sbjct: 353 -YPGSHYSRVPPPDGPYTRALPPGEPYARMPPPGATHPRVPSPGASHPRVPPPGAP 407
Score = 28.3 bits (60), Expect = 7.5
Identities = 30/109 (27%), Positives = 32/109 (29%), Gaps = 1/109 (0%)
Frame = +2
Query: 140 PPPISHRRLRLEKGARSTCPAERLPTKPH-RAPPLRLHETHGTAQCAPKARRRRYPSC** 316
PP H+R+ P P PH R PP AP R P
Sbjct: 493 PPGAPHQRVPPPGAPHPRVPP---PGAPHPRVPPPGAPHPRVPPPGAPHPRVPP-PGAPH 548
Query: 317 DGTPSPGKXXXXXXXXXXXXGAQEPPCAASPPDQQPSTGHPRTRHPTAP 463
P PG PP A P P T HPR P AP
Sbjct: 549 PRVPPPGASHPRVPPPGAPHPRVPPPGAPHPRVPPPGTPHPRVPPPGAP 597
>SB_34170| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +3
Query: 141 LPQFLTGDYALKKAREALAPQNDYRLNPIEPHHSD--STKPTVPHSARR 281
L + LTG+ + + A AP+++ LNPI P+ + +T PTVP ++R
Sbjct: 280 LNEVLTGETSAEPA----APEDEDYLNPIAPNSNKHLATMPTVPRRSQR 324
>SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1142
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +3
Query: 198 PQNDYRLNPIEPHHSDSTKPTVPHSARRRLAVAGTHPVNRTALHPRENPAGRRLGDTP 371
P N + NP PH+S + P P + R+ P N +HP+ +P ++ P
Sbjct: 324 PHNGRKSNPNPPHNSRKSNPNPPLNGRKS---NPNPPHNGPKVHPQPSPQWPKVHPQP 378
Score = 28.7 bits (61), Expect = 5.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 198 PQNDYRLNPIEPHHSDSTKPTVPHSARR 281
P N + NP PH+ + P PH++R+
Sbjct: 313 PLNGRKSNPNPPHNGRKSNPNPPHNSRK 340
>SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5)
Length = 635
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 200 AERLPTKPHRAPPL-RLHETHGTAQCAPKARRRRY 301
A + T P R PPL RLH+T +A CA R++ Y
Sbjct: 143 ARTVQTSPDRQPPLYRLHQT-DSAHCADYTRQKVY 176
>SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10)
Length = 968
Score = 29.5 bits (63), Expect = 3.2
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Frame = +3
Query: 213 RLNPIEPHHSDSTKPTVPHSARRRLAVAGTHPVNRTALHPRENPAGRRL--GDTP*AVHR 386
RL+ H + P+ H RL TH T +HPR + TP HR
Sbjct: 806 RLHTEYTHAYTPSTPSPTHRVHTRLHTKYTHAY--TPIHPRLHAEYTHAYTPSTPKPTHR 863
Query: 387 SHLAPPHHRTNSRVPGTPAP 446
H + T++ P TP P
Sbjct: 864 VHPSLHAGYTHTYTPSTPTP 883
>SB_20563| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 29.5 bits (63), Expect = 3.2
Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Frame = +3
Query: 237 HSDSTKPTV---PHSARRRLAVA-GTHPVNRTALHPRENPAGRRLGDTP*AVHRSHLAPP 404
+S ST+P + H RRL V +HP R L NPA P V SHL
Sbjct: 123 YSSSTQPCIVFDSHLTGRRLRVVFKSHPTPRR-LQVALNPASSSSRTKPCVVFDSHLTRR 181
Query: 405 HHRTNSRVPGTP 440
HR + TP
Sbjct: 182 RHRVVLKSHPTP 193
>SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 794
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +2
Query: 392 PCAASPPDQQPSTGHPRTRHPTA-PTGDER 478
P PD QPST H R P+A PT D +
Sbjct: 760 PSTVHTPDNQPSTVHTRGSQPSAVPTQDSQ 789
>SB_58632| Best HMM Match : Flp_Fap (HMM E-Value=1.1)
Length = 297
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +3
Query: 216 LNPIEPHHSDSTKPTVPHSARRRLAVAGTH-PVNRTALHPRENPAGRRLGDTP*AVH 383
L P +P +S P S+R A+ P R AL PR +P R G T VH
Sbjct: 29 LIPFDPDDGESI-PMTSTSSRTHAAIGRLRKPQKRQALKPRSSPRLSRKGKTEIQVH 84
>SB_26888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 431 GHPRTRHPTAPTGDERELRARAAHSA 508
GHPR +H T P G +RE+R++A+ A
Sbjct: 23 GHPRVQHVTDP-GIDREVRSKASAPA 47
>SB_24017| Best HMM Match : DUF646 (HMM E-Value=4.1)
Length = 486
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 431 GHPRTRHPTAPTGDERELRARAAHSA 508
GHPR +H T P G +RE+R++A+ A
Sbjct: 399 GHPRVQHVTDP-GIDREVRSKASAPA 423
>SB_8656| Best HMM Match : Chorion_3 (HMM E-Value=2.4)
Length = 352
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 431 GHPRTRHPTAPTGDERELRARAAHSA 508
GHPR +H T P G +RE+R++A+ A
Sbjct: 270 GHPRVQHVTDP-GIDREVRSKASAPA 294
>SB_39424| Best HMM Match : Pox_A32 (HMM E-Value=0.033)
Length = 1004
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 431 GHPRTRHPTAPTGDERELRARAAHSA 508
GHPR +H T P G +RE+R++A+ A
Sbjct: 297 GHPRVQHVTDP-GIDREVRSKASAPA 321
>SB_57266| Best HMM Match : POPLD (HMM E-Value=0.55)
Length = 558
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -3
Query: 681 PHRGAGERPLL-AGCHRPHXKG 619
PH GAG+RP AGCHR H G
Sbjct: 41 PHPGAGKRPCSDAGCHR-HSMG 61
>SB_46006| Best HMM Match : MAAL_N (HMM E-Value=3.7)
Length = 260
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 425 STGHPRTRHPTAPTGDERELRARAAH 502
+ GHPR +H T P D RE+R R +H
Sbjct: 224 AAGHPRVQHVTDPRID-REVRRRHSH 248
>SB_33346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1074
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 416 QQPSTGHPRTRHPTAPTGDERELRARAAHSAF 511
+ P G R PT P+G ++E+R + SAF
Sbjct: 198 EPPDNGVESARSPTTPSGTQQEVRVDSKLSAF 229
>SB_57323| Best HMM Match : ShTK (HMM E-Value=0)
Length = 911
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 386 EPPCAASPPDQQPSTGHPRTRHPTAP 463
+P C PD QP T P T+ P P
Sbjct: 693 DPDCTTETPDTQPPTQPPVTQPPDTP 718
>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3762
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 395 CAASPPDQQPSTGHPRTRHPTAP 463
C P Q P G P+T PTAP
Sbjct: 2323 CTICPACQTPKPGEPQTSQPTAP 2345
>SB_27312| Best HMM Match : Pox_A32 (HMM E-Value=0.012)
Length = 1115
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +1
Query: 364 THRERCTGATLRRLTTGPTAEYRAPPHPAPD 456
THR A R GP AE A PH A D
Sbjct: 641 THRRELAAAFTRTPAGGPGAERAADPHTAAD 671
>SB_19217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/17 (70%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Frame = -3
Query: 681 PHRGAGERPLL-AGCHR 634
PH GAG+RP AGCHR
Sbjct: 39 PHPGAGKRPCSDAGCHR 55
>SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)
Length = 325
Score = 27.9 bits (59), Expect = 9.9
Identities = 29/118 (24%), Positives = 40/118 (33%), Gaps = 3/118 (2%)
Frame = +2
Query: 119 EKSRGPS--PPPISHRRLRLEKGARSTCPAERLPTKPHRAPPLRLHETHGTAQCAPKARR 292
EK PS PP+ RR TCPAE+ PP++ G A+ P R
Sbjct: 49 EKPHRPSRETPPVQPRR-------NPTCPAEKHHRSSKETPPVQPRNLAGPAE-KPHRSR 100
Query: 293 RRYPSC**DGTPSPGKXXXXXXXXXXXXGAQEPPCAASPPDQQPSTGHP-RTRHPTAP 463
R SP + + P A P + P + R+P +P
Sbjct: 101 RETQLAQPRNPTSPAEKPHQSSKETQPVQQRNPAGPAKKPSRSSKETQPVQQRNPASP 158
>SB_38456| Best HMM Match : BTB (HMM E-Value=8.8e-26)
Length = 1410
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 392 PCAASPPDQQPSTGHPRTRHPTAPT 466
P +PP PST P T P PT
Sbjct: 325 PATNAPPSDSPSTTTPTTPQPPTPT 349
>SB_30592| Best HMM Match : MAM (HMM E-Value=2.66247e-44)
Length = 667
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 392 PCAASPPDQQPSTGHPRTRHPTAPTGD 472
P PP P+T P T+ P PTGD
Sbjct: 434 PPPTPPPTPPPTTLPPTTQPPPQPTGD 460
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,670,301
Number of Sequences: 59808
Number of extensions: 598464
Number of successful extensions: 2338
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2311
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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