Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_H12
(785 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 50 2e-06
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 31 0.71
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 0.71
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 0.71
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 0.71
Z35640-1|CAA84705.1| 307|Caenorhabditis elegans Hypothetical pr... 29 2.9
L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient ... 29 3.8
L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient ... 29 3.8
AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologou... 29 3.8
AC024859-17|AAN84887.1| 105|Caenorhabditis elegans Hypothetical... 29 3.8
U50071-4|AAM75382.1| 1841|Caenorhabditis elegans Uncoordinated p... 29 5.0
U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical p... 29 5.0
Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical pr... 28 6.6
U80954-3|AAK77630.1| 603|Caenorhabditis elegans Defective in ge... 28 6.6
U80954-2|AAK77629.1| 977|Caenorhabditis elegans Defective in ge... 28 6.6
AY347577-1|AAP97871.1| 322|Caenorhabditis elegans COLlagen stru... 28 6.6
AC006665-1|AAF39908.1| 322|Caenorhabditis elegans Dumpy : short... 28 6.6
AC006630-5|AAK68323.1| 335|Caenorhabditis elegans Collagen prot... 28 6.6
Z82076-4|CAB04937.2| 438|Caenorhabditis elegans Hypothetical pr... 28 8.7
U53141-5|AAA96107.1| 574|Caenorhabditis elegans Hypothetical pr... 28 8.7
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas... 28 8.7
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 28 8.7
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 50.0 bits (114), Expect = 2e-06
Identities = 39/157 (24%), Positives = 60/157 (38%)
Frame = +2
Query: 122 KSRGPSPPPISHRRLRLEKGARSTCPAERLPTKPHRAPPLRLHETHGTAQCAPKARRRRY 301
KSR SPP + RR R ++S PA + ++PP R + ++ P RRRR
Sbjct: 335 KSRSKSPPAPARRR-RSPSASKSPPPAPKRAKSRSKSPPARRRRSPSASKSPPAPRRRRS 393
Query: 302 PSC**DGTPSPGKXXXXXXXXXXXXGAQEPPCAASPPDQQPSTGHPRTRHPTAPTGDERE 481
PS +P+P + ++ PP + S PR R + +
Sbjct: 394 PSK--SRSPAPKREIPPARRRRSPSASKSPPAPKRAKSRSKSPPAPRRRRSPSQSKSPAP 451
Query: 482 LRARAAHSAFFAVKPKRDPLPFALLSLTERHDQVAKP 592
R R+ + A + +R P S R A P
Sbjct: 452 RRRRSPSKSPQAPRRRRSPSGSKSRSPRRRRSPAAAP 488
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 31.5 bits (68), Expect = 0.71
Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 4/174 (2%)
Frame = +2
Query: 128 RGPSPPPISHRRLRLEKGARSTCPAERLPTKP--HRAPPLRLHETHGTAQCAPKARRRRY 301
+ P P + + + + A + P ++ P KP +APP+R + Q AP +++
Sbjct: 339 QNPPKPAVQQAQAPVVQQAPAP-PVQQAPPKPTPQQAPPVRQNPPMPAVQQAPSSQQATQ 397
Query: 302 PSC**DGTPSPGKXXXXXXXXXXXXGAQEPPCAASPPDQQPSTGHPRTRHPTAPTGDERE 481
P+P + + PP + P Q P T P+AP
Sbjct: 398 A----PPKPAPQQAPPVQQNPPKPTPSPAPPAQKAQPVTQQQASAPPT-SPSAPVQAPNT 452
Query: 482 LRARAAHSAFFAVK--PKRDPLPFALLSLTERHDQVAKPGHGLPKNXGPLXCGR 637
+A+ + P ++P + + T++ + PG PK+ P G+
Sbjct: 453 PTQKASSQDPIVQQDPPPKEPSISSEPTTTKKPRKSFSPGSATPKHTQPSENGK 506
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.5 bits (68), Expect = 0.71
Identities = 30/113 (26%), Positives = 38/113 (33%), Gaps = 1/113 (0%)
Frame = +2
Query: 134 PSPPPISHRRLRLEKGARSTCPAERLPT-KPHRAPPLRLHETHGTAQCAPKARRRRYPSC 310
P PPP R+ + P PT +P R P + E ++ P+ R P
Sbjct: 329 PPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPR- 387
Query: 311 **DGTPSPGKXXXXXXXXXXXXGAQEPPCAASPPDQQPSTGHPRTRHPTAPTG 469
G P + PP SPP P TG P P PTG
Sbjct: 388 ---GGPRKSSEESSESREEPRGPRRSPP-TGSPPTGSPPTGRPPRGSP--PTG 434
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.5 bits (68), Expect = 0.71
Identities = 30/113 (26%), Positives = 38/113 (33%), Gaps = 1/113 (0%)
Frame = +2
Query: 134 PSPPPISHRRLRLEKGARSTCPAERLPT-KPHRAPPLRLHETHGTAQCAPKARRRRYPSC 310
P PPP R+ + P PT +P R P + E ++ P+ R P
Sbjct: 350 PPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPR- 408
Query: 311 **DGTPSPGKXXXXXXXXXXXXGAQEPPCAASPPDQQPSTGHPRTRHPTAPTG 469
G P + PP SPP P TG P P PTG
Sbjct: 409 ---GGPRKSSEESSESREEPRGPRRSPP-TGSPPTGSPPTGRPPRGSP--PTG 455
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.5 bits (68), Expect = 0.71
Identities = 30/113 (26%), Positives = 38/113 (33%), Gaps = 1/113 (0%)
Frame = +2
Query: 134 PSPPPISHRRLRLEKGARSTCPAERLPT-KPHRAPPLRLHETHGTAQCAPKARRRRYPSC 310
P PPP R+ + P PT +P R P + E ++ P+ R P
Sbjct: 335 PPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPR- 393
Query: 311 **DGTPSPGKXXXXXXXXXXXXGAQEPPCAASPPDQQPSTGHPRTRHPTAPTG 469
G P + PP SPP P TG P P PTG
Sbjct: 394 ---GGPRKSSEESSESREEPRGPRRSPP-TGSPPTGSPPTGRPPRGSP--PTG 440
>Z35640-1|CAA84705.1| 307|Caenorhabditis elegans Hypothetical
protein F43D9.2 protein.
Length = 307
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +2
Query: 386 EPP--CAASPPDQQPSTGHPRTRHPTAPTGDERELRARAAHSAFFAVKPKRDPLPFAL 553
+PP A+ PD+ + HP+ HP+AP + + + P P P A+
Sbjct: 21 DPPKHVTATHPDELTTASHPQPTHPSAPQDPSPAVPSTPVRVPYPTAPPPIPPAPEAV 78
>L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform b
protein.
Length = 1047
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Frame = +3
Query: 141 LPQFLTGDYALKKAREALAPQNDYRL--NPIEPHHSDSTKPTV-------PHSARRRLAV 293
LP ++ + +KK+ + A + D +L P+ ++ S P + PHSA R+
Sbjct: 913 LPGIISEEAPVKKSTKRRASEADSKLPDRPLSDTYTSSFTPKLLPVFAQPPHSALRKTDT 972
Query: 294 AGTHPVNRTAL 326
+ + P+N TAL
Sbjct: 973 SMSFPINGTAL 983
>L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform a
protein.
Length = 1027
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Frame = +3
Query: 141 LPQFLTGDYALKKAREALAPQNDYRL--NPIEPHHSDSTKPTV-------PHSARRRLAV 293
LP ++ + +KK+ + A + D +L P+ ++ S P + PHSA R+
Sbjct: 893 LPGIISEEAPVKKSTKRRASEADSKLPDRPLSDTYTSSFTPKLLPVFAQPPHSALRKTDT 952
Query: 294 AGTHPVNRTAL 326
+ + P+N TAL
Sbjct: 953 SMSFPINGTAL 963
>AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologous
cation channel proteinprotein.
Length = 1027
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Frame = +3
Query: 141 LPQFLTGDYALKKAREALAPQNDYRL--NPIEPHHSDSTKPTV-------PHSARRRLAV 293
LP ++ + +KK+ + A + D +L P+ ++ S P + PHSA R+
Sbjct: 893 LPGIISEEAPVKKSTKRRASEADSKLPDRPLSDTYTSSFTPKLLPVFAQPPHSALRKTDT 952
Query: 294 AGTHPVNRTAL 326
+ + P+N TAL
Sbjct: 953 SMSFPINGTAL 963
>AC024859-17|AAN84887.1| 105|Caenorhabditis elegans Hypothetical
protein Y71H2AM.20b protein.
Length = 105
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +2
Query: 434 HPRTRHPTAPTGDERELRARAAHSAF-FAVKPKRDPLPFALLSLTERHDQVAKPG 595
HPR AP+ D RA A H F F V ++ +P A + T V + G
Sbjct: 29 HPRESMEDAPSQDPMPPRAPAQHGMFAFKVNSEKKMIPSAANTSTVHSSSVVESG 83
>U50071-4|AAM75382.1| 1841|Caenorhabditis elegans Uncoordinated
protein 44, isoform e protein.
Length = 1841
Score = 28.7 bits (61), Expect = 5.0
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Frame = +1
Query: 280 EGSPSPVPILLIGRHSIPGKIPQD----VVSETHRERCTGATLRRLTTGPTAEYRAPPHP 447
E SPSP I S ++P+D V SE+HRE +TT + A H
Sbjct: 1729 ESSPSPAQRSTIVAESTSEQVPEDVEQSVESESHREDDGTIVTTTVTTSHISASGAEQHS 1788
Query: 448 APDS 459
DS
Sbjct: 1789 GQDS 1792
>U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical
protein R144.2a protein.
Length = 823
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/75 (25%), Positives = 28/75 (37%)
Frame = +2
Query: 389 PPCAASPPDQQPSTGHPRTRHPTAPTGDERELRARAAHSAFFAVKPKRDPLPFALLSLTE 568
PP +++PP Q P HP+ P G R + + P + P P L E
Sbjct: 337 PPLSSAPPFQHPQQHHPQLPPPPVHQGMGRGYHHNSPPQDPAPIVPVQAPPPQQHLPAPE 396
Query: 569 RHDQVAKPGHGLPKN 613
+P +P N
Sbjct: 397 NVYSSEQPKLDVPAN 411
>Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical
protein F33E2.6 protein.
Length = 846
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = +2
Query: 386 EPPCAASPPDQQPSTGHPRTRHP-TAPTGDERELRARAAHSAFFAVKPKRDP 538
EPP P P T PRT P T P E R A V P+ +P
Sbjct: 554 EPPRTEPPRTIPPRTEAPRTEPPRTEPPKTEAPRTVRPKTEAPMTVPPRTEP 605
>U80954-3|AAK77630.1| 603|Caenorhabditis elegans Defective in germ
line developmentprotein 3, isoform b protein.
Length = 603
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +2
Query: 119 EKSRGPSPPPISHRRLRLEKGARSTCPAERLPTKPHRAPPLRLHETH 259
E S GPS SH R+ ST P + PT PH APP+ H
Sbjct: 491 ESSGGPSR---SHTRVSSFSENSSTVPIMQFPT-PHFAPPMLTPHHH 533
>U80954-2|AAK77629.1| 977|Caenorhabditis elegans Defective in germ
line developmentprotein 3, isoform a protein.
Length = 977
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +2
Query: 119 EKSRGPSPPPISHRRLRLEKGARSTCPAERLPTKPHRAPPLRLHETH 259
E S GPS SH R+ ST P + PT PH APP+ H
Sbjct: 491 ESSGGPSR---SHTRVSSFSENSSTVPIMQFPT-PHFAPPMLTPHHH 533
>AY347577-1|AAP97871.1| 322|Caenorhabditis elegans COLlagen
structural gene, probablya critical component of the
embryonically derived outerlayer of the L1 cuticle (31.8
kD) (col-59) protein.
Length = 322
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +2
Query: 377 GAQEPPCAASPPDQQPSTGHPRTRHPTAPTG 469
G Q PC PP Q G P + P P G
Sbjct: 170 GLQSEPCMICPPGAQGLGGAPGAKGPQGPRG 200
>AC006665-1|AAF39908.1| 322|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 14 protein.
Length = 322
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +2
Query: 377 GAQEPPCAASPPDQQPSTGHPRTRHPTAPTG 469
G Q PC PP Q G P + P P G
Sbjct: 170 GLQSEPCMICPPGAQGLGGAPGAKGPQGPRG 200
>AC006630-5|AAK68323.1| 335|Caenorhabditis elegans Collagen protein
165 protein.
Length = 335
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +2
Query: 377 GAQEPPCAASPPDQQPSTGHPRTRHPTAPTG 469
G Q PC PP Q G + PT P G
Sbjct: 183 GLQSEPCMICPPGPQGLMGQAGKKGPTGPRG 213
>Z82076-4|CAB04937.2| 438|Caenorhabditis elegans Hypothetical
protein W07G1.5a protein.
Length = 438
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 389 PPCAASPPDQQPSTGHPRTRHPTAPTGDERE 481
PP AS P + G P R PT + +E E
Sbjct: 320 PPVVASRPATAKAPGTPANRQPTPESSEEEE 350
>U53141-5|AAA96107.1| 574|Caenorhabditis elegans Hypothetical
protein C14C11.2 protein.
Length = 574
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +3
Query: 222 PIEPHHSDSTKP-TVPHSARRRLAV-AGTHPVNRTALHPRE 338
PI P +SD++KP P A R L + G+H + + PRE
Sbjct: 76 PIAPVYSDASKPLNSPSVASRILTIPPGSHVLGLPGVDPRE 116
>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 1 protein.
Length = 2500
Score = 27.9 bits (59), Expect = 8.7
Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 18/117 (15%)
Frame = +2
Query: 377 GAQEPPCAASPPDQQPSTG------HPRTRHPTAPTGDERELRARAA------HSAFFAV 520
G+ PP P QQP H + PT PT ++++ + + A FA
Sbjct: 685 GSGLPPSGVVPVQQQPQQPPSLQQQHSQQSLPTPPTTSQQQIHVQQSVPGPIQRPAQFAP 744
Query: 521 KPKRDPLPFA------LLSLTERHDQVAKPGHGLPKNXGPLXCGR*QPARRGLSPAP 673
+P P A ++ Q A+PG L N P G + + + PAP
Sbjct: 745 QPMFPPQAQAQHQHQHMMGQPPPSSQNAQPGMNLLMNMSPFASGNNRDLLKVVQPAP 801
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = +2
Query: 128 RGPSPPPISHRRLRLEKGARSTCPAERLPTKPHRAPPLRLHETHGTAQCAPKARRRR 298
R PSPP RR+ RS P R ++ PP R ++ P A+RRR
Sbjct: 113 RSPSPP--RRRRISRSPVRRSRSPPRRQVSRSRSPPPRRQQR----SRSPPPAKRRR 163
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,308,581
Number of Sequences: 27780
Number of extensions: 415234
Number of successful extensions: 1457
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1437
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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