BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_T7_H11 (774 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 28 1.3 SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 27 3.0 SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 26 5.2 SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 26 6.9 SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 25 9.1 SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces... 25 9.1 >SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schizosaccharomyces pombe|chr 1|||Manual Length = 607 Score = 28.3 bits (60), Expect = 1.3 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Frame = +1 Query: 592 LRNDRKSRHRRIKKQRRYEHLAATSQLSPGGTFLAP--LAKTLYTKGSIGRAFAVP 753 L+N + I R +HL A S G FL+P L + +Y+K +G +F P Sbjct: 337 LKNSNNQLNNHIDDLTREKHLIALSNNPKGDEFLSPSNLDEMVYSK-EVGLSFTQP 391 >SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces pombe|chr 2|||Manual Length = 568 Score = 27.1 bits (57), Expect = 3.0 Identities = 25/115 (21%), Positives = 48/115 (41%) Frame = -3 Query: 415 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRS 236 A A+ +A A +AEA E+ K+++ EP+++ +K+ + R Sbjct: 89 AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNG 148 Query: 235 PFGSRRSMLSVFFLTRASRLRRSGYNSVRCRGSE*SVDDFRSWRGVVLGRAASCC 71 R+ + F+ + R G ++C S V D S+ + LG ++ C Sbjct: 149 WVHRMRTQKGIIFI-----ILRDGTGFLQCVLSG-KVYDRASYDFINLGPESTVC 197 >SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 397 Score = 26.2 bits (55), Expect = 5.2 Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 1/133 (0%) Frame = -3 Query: 481 SNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESG 302 S+T+ R H L ++ L S G +S +++ GK+ V P + Sbjct: 271 SSTSAKRRRPDHNH-TSTLDASSSNTSLASTGPMTVSS---STVERKGKEASEVNPNSTS 326 Query: 301 GSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRSGYNSVRC-RGSE*SV 125 DF + +S S+ ++S G R R R +G NS C + V Sbjct: 327 SVTFSDFAAAISRSRCSRCKKSKKGCDRQ-------RPCGRCRDAGLNSEDCISDDDMPV 379 Query: 124 DDFRSWRGVVLGR 86 + R RG GR Sbjct: 380 SNARKPRGRGRGR 392 >SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 512 Score = 25.8 bits (54), Expect = 6.9 Identities = 18/60 (30%), Positives = 27/60 (45%) Frame = +3 Query: 78 DAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSR 257 D +PS P +SS+ S RH + +L S + D LRD + + RVS+ Sbjct: 119 DNLIPSPLPESASRSSSQSSHQRHSRDGRGELGSEHGERRSAMDG--LRDRHIRKVRVSQ 176 >SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pombe|chr 2|||Manual Length = 992 Score = 25.4 bits (53), Expect = 9.1 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%) Frame = -3 Query: 487 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA--SKAEASLAESG 338 CD+ + S G L H + R GG + + + N+ SK E +A SG Sbjct: 601 CDACLNLGTHSESIGDLEHQIRRYTGGISISPSAVTNNSDVSKYELGIAISG 652 >SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces pombe|chr 1|||Manual Length = 312 Score = 25.4 bits (53), Expect = 9.1 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -3 Query: 127 VDDFRSWRGVVLGRAASCCDLLRLS 53 VD FR W + SC DLL+LS Sbjct: 72 VDGFRLWITMEYCDGGSCLDLLKLS 96 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,109,241 Number of Sequences: 5004 Number of extensions: 63707 Number of successful extensions: 159 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 155 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 159 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 373338084 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -