Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_H10
(807 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1310 + 29238644-29240260 35 0.066
12_01_0302 - 2286171-2286341,2286747-2286968 29 4.4
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 5.8
06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445... 29 5.8
04_01_0489 + 6436641-6437966 29 5.8
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 5.8
08_02_1615 + 28257275-28258428,28258523-28259144 28 7.6
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950... 28 7.6
>06_03_1310 + 29238644-29240260
Length = 538
Score = 35.1 bits (77), Expect = 0.066
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -2
Query: 680 HQIPDSIHQPPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPSAYLTPS-SLGMXKGVSP 504
H+ P H PP+ P P P +P P PP SE+P + + PS S G SP
Sbjct: 381 HRSPLPHHMPPRRTPPTPPPPSSPTPSHLPP--PPPTYSESPKSSMPPSTSPPSSHGASP 438
Query: 503 P 501
P
Sbjct: 439 P 439
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 91 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 192
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 83 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 229
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>06_03_1006 +
26844161-26844198,26844304-26844372,26844526-26844591,
26844831-26844902,26844982-26845053,26846179-26846244,
26846409-26846881,26846966-26847324,26847429-26847697,
26847780-26847918,26848323-26848462,26848612-26848768,
26848925-26848978,26849457-26849539,26851085-26851136
Length = 702
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 718 PPFPCDXGYINPIIKSPIPYTNHPRLN 638
PPFP + +NP++ Y + PR+N
Sbjct: 336 PPFPVEKVTVNPVVPPEKRYISPPRIN 362
>04_01_0489 + 6436641-6437966
Length = 441
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +2
Query: 527 PVTRG*DTLMEPLMTTEALTPARTPSSTASGGLMEMDVKSGVVGVWNRGFDDRVDVXXIA 706
PV+ G D+L E A+ A + +++ + S V+G FDD DV
Sbjct: 193 PVSCGDDSLPELPPLVAAMEKAMLTQESKQFAYLDVTIPSSVIGRVKAAFDDVGDVARSG 252
Query: 707 GE 712
GE
Sbjct: 253 GE 254
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -3
Query: 250 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 71
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 70 ILHSF 56
+LHSF
Sbjct: 1408 LLHSF 1412
>08_02_1615 + 28257275-28258428,28258523-28259144
Length = 591
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/62 (30%), Positives = 24/62 (38%)
Frame = -2
Query: 689 QPDHQIPDSIHQPPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGV 510
QP H H PQ+ HP P P AP PP S P ++ + L K +
Sbjct: 32 QPPHSHLLHHHHSPQS-HPQPDAPAAAAPPPPAPLTPPPPKSPPPPPHIQTTDLPPPKPL 90
Query: 509 SP 504
P
Sbjct: 91 PP 92
>02_02_0369 -
9505330-9505652,9507262-9507532,9507649-9507690,
9508416-9508458,9508853-9508860
Length = 228
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Frame = -2
Query: 635 PFPSIPLTPY*KEFAPGLKPPLSSEAPSAYLT--PSSLGMXKGVSPP 501
P P P P APG P S P+ Y T P G G PP
Sbjct: 158 PLPRPPTLPPPTSGAPGAPIPNSGAPPAMYQTNPPQPAGPTSGAPPP 204
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,434,457
Number of Sequences: 37544
Number of extensions: 447876
Number of successful extensions: 1296
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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