Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_H10
         (807 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)                   29   3.4  
SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06)                 29   4.4  
SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07)          29   5.9  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)                   28   7.7  

>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2437

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -2

Query: 596  FAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQVNDESQASRLISR 453
            FA     P SS++PSA  +P+S       SP  F  + E +   +IS+
Sbjct: 1096 FATTTMSPTSSQSPSAVTSPTSPRSPSNPSPASFGFHSEDEPVTMISK 1143


>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
          Length = 3616

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/66 (25%), Positives = 34/66 (51%)
 Frame = -3

Query: 247  PFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SLI 68
            P D +  +N+ +VL DNKT  L+   +  +P S   + + +P ++ + S     ++  + 
Sbjct: 2292 PVDAIWIENLNSVLDDNKTLTLANGDR--IPMSPQCKIVFEPHNIDNASPATVSRNGMVY 2349

Query: 67   LHSFGL 50
            + S GL
Sbjct: 2350 MSSSGL 2355


>SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06)
          Length = 1532

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 247  PFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDS 101
            P D +  +N+ +VL DNKT  L+   +  +P S   + + +P ++ + S
Sbjct: 1384 PVDAIWIENLNSVLDDNKTLTLANGDR--IPMSPTCKVVFEPHNIDNAS 1430


>SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07)
          Length = 592

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
 Frame = -3

Query: 367 YKVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLK---DN 197
           + + + DN L T   L +K+    G   +VFD         FDT+    +R   +   DN
Sbjct: 313 HSLTMIDNEL-TGDPLDIKMFEATG---WVFDEPGE-DNKKFDTIAPSTVRPKTREMTDN 367

Query: 196 KTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVK 83
           +  L    I+    SS++ R  V  R + SD   VYVK
Sbjct: 368 QVPLEVGIIRQFPFSSDVQRMTVITRILGSDHMDVYVK 405


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -2

Query: 650  PQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPP 501
            P T  P P +PL P      P   PP+ +  P+   TP++       +PP
Sbjct: 903  PTTPAPPPPLPLAPEPPPPLPPPPPPIQTTRPTVPTTPTTQASTTRPTPP 952


>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 247  PFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDS 101
            P D +  +N+ +VL DNKT  L+   +  +P S   + + +P ++ + S
Sbjct: 2286 PVDAIWIENLNSVLDDNKTLTLANGDR--IPMSPQCKVVFEPHNIDNAS 2332


>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
          Length = 2748

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -1

Query: 657  PTTPDLTSISINPPDAVLEGVRAGVKASVVIRGSI--SVSHPLVTG 526
            PT+P++TS S  P     + ++AG +  VV+  ++  SV  P++ G
Sbjct: 1911 PTSPEMTSRSGQPFKRFTKHIKAGDRLRVVMGSTVLKSVLQPVIQG 1956


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,076,617
Number of Sequences: 59808
Number of extensions: 452422
Number of successful extensions: 1243
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)