Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_H10
         (807 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    29   3.0  
Z67754-2|CAA91752.2|  677|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U97408-1|AAB93344.2|  360|Caenorhabditis elegans Trypsin-like pr...    29   5.2  
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical...    28   9.0  
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    28   9.0  

>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = -2

Query: 689 QPDHQIPDSIHQP-PQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPSAYLTPS 534
           QP    P     P PQ   P P+ P  PY +   P   PPL+S   +A   P+
Sbjct: 44  QPQQTAPPPPPAPYPQQAVPAPAPPPAPYPQHAVPAPAPPLASYPQNAVPVPA 96


>Z67754-2|CAA91752.2|  677|Caenorhabditis elegans Hypothetical
           protein C34E11.2 protein.
          Length = 677

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 8/88 (9%)
 Frame = -2

Query: 692 HQPDH--QIPDSIHQPPQT*HPFPSI---PL-TPY*KEFAPGLKPPL--SSEAPSAYLTP 537
           H P+H   +P S    P      P++   P+ TP     A  L PP+  SS  P    TP
Sbjct: 446 HTPEHVCPLPRSFSSTPAAEQFLPTLEGAPVWTPSAVSTASELSPPIPMSSPPPPLPRTP 505

Query: 536 SSLGMXKGVSPPYFQVNDESQASRLISR 453
                    S PY Q+N+    +R  +R
Sbjct: 506 QPNNGLPNASLPYNQINNAGSFTRTAAR 533


>U97408-1|AAB93344.2|  360|Caenorhabditis elegans Trypsin-like
           protease protein 6 protein.
          Length = 360

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 584 TPARTPSSTASGGLMEMDVKSGVVGVWNRGFDDR 685
           T    P  + +GG+ E+D ++ VVGV+ + F ++
Sbjct: 276 TSVACPGDSGAGGVKEIDKRTTVVGVFTKKFREK 309


>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18b protein.
          Length = 1459

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 575  PLSSEAPSAYLTPSSLGMXKGVSPP 501
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18a protein.
          Length = 1456

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 575  PLSSEAPSAYLTPSSLGMXKGVSPP 501
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,178,714
Number of Sequences: 27780
Number of extensions: 331486
Number of successful extensions: 1018
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)