BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_T7_H04 (808 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 29 1.0 SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 28 1.4 SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 28 1.4 SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 28 1.4 SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.8 SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 3.1 SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 27 3.1 SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 26 5.5 SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 26 5.5 SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 26 5.5 SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 5.5 SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 26 7.2 SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy... 25 9.6 SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 25 9.6 SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 25 9.6 SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 9.6 >SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosaccharomyces pombe|chr 2|||Manual Length = 352 Score = 28.7 bits (61), Expect = 1.0 Identities = 20/77 (25%), Positives = 29/77 (37%) Frame = -1 Query: 712 KPPSPAISXTSTRSSNPRFHTPTTPDLTSXSINPLTPY*KEFAPGLKPPLSSEAPSAYLT 533 +PPS A+ + + P P P + NP TP+ P + A + L Sbjct: 245 RPPSMALLPSKQSTYWPALAAPVYPSMKDVPNNPFTPF-SPINPYYAKSWNHTASAPLLP 303 Query: 532 PSSLGMXKGVSPPYFQV 482 P G+ G PY V Sbjct: 304 P---GLKNGSDYPYLSV 317 >SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 570 Score = 28.3 bits (60), Expect = 1.4 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = +1 Query: 103 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 231 R +A Y+ + LGG++ S+ EK F + N DV+ + G Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154 >SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 857 Score = 28.3 bits (60), Expect = 1.4 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 4/50 (8%) Frame = -1 Query: 706 PSPAISXTSTRSSN---PRFHTPTTPD-LTSXSINPLTPY*KEFAPGLKP 569 P P+IS T+T SS H PTTPD + L P +P KP Sbjct: 273 PKPSISTTTTGSSYRSAESSHAPTTPDHFKLTPLTKLEPQPPSGSPSKKP 322 >SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1236 Score = 28.3 bits (60), Expect = 1.4 Identities = 16/39 (41%), Positives = 17/39 (43%) Frame = -1 Query: 736 LAVSPLCIKPPSPAISXTSTRSSNPRFHTPTTPDLTSXS 620 LA S S IS +ST N FH PT TS S Sbjct: 790 LATSLYLSSSSSRTISTSSTNEYNTSFHAPTVSSTTSSS 828 >SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 800 Score = 27.9 bits (59), Expect = 1.8 Identities = 20/54 (37%), Positives = 26/54 (48%) Frame = -1 Query: 709 PPSPAISXTSTRSSNPRFHTPTTPDLTSXSINPLTPY*KEFAPGLKPPLSSEAP 548 PP PA + ++ SS+P T +T TS SI P P + PP SS P Sbjct: 370 PPPPASTSSTGTSSSPLLST-STSCTTSTSIPPTGNSTTPVTPTV-PPTSSSTP 421 >SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosaccharomyces pombe|chr 1|||Manual Length = 745 Score = 27.1 bits (57), Expect = 3.1 Identities = 10/32 (31%), Positives = 20/32 (62%) Frame = -2 Query: 258 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 163 CY P + + L ++I+T+L DN ++ A++ Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199 >SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 988 Score = 27.1 bits (57), Expect = 3.1 Identities = 20/78 (25%), Positives = 34/78 (43%) Frame = -2 Query: 357 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 178 K K+ D V K + +S T+ +V + YF PF+ V+ +K + T Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664 Query: 177 LSASIQASLPSSEIYRQL 124 + + SSEI++ L Sbjct: 665 VDFVDYWTKSSSEIFKML 682 >SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces pombe|chr 3|||Manual Length = 384 Score = 26.2 bits (55), Expect = 5.5 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%) Frame = -1 Query: 715 IKPPSPAISXTSTRSSNPRFHTPTTPDLTSXSINPLTPY*KEFAPG--LKPPLSSEAPSA 542 I+ S + TS S++ ++ +TP+ S + LTP + L+ PL +PSA Sbjct: 294 IRSHSTNTTITSVDSASTALNSYSTPNSVSRKLTNLTPAARRLVARSYLRSPLHGSSPSA 353 >SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizosaccharomyces pombe|chr 2|||Manual Length = 468 Score = 26.2 bits (55), Expect = 5.5 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 6/62 (9%) Frame = -1 Query: 703 SPAISXTSTRSS-NPRFHTPTTPDLTSXSINPLTP-----Y*KEFAPGLKPPLSSEAPSA 542 SP +S S +P P+TP + SI+P TP Y + A L PLS + +A Sbjct: 284 SPELSADKVLSHCSPIDARPSTPSCPNASISPKTPNTGDHYGFDGAEYLGTPLSVGSTTA 343 Query: 541 YL 536 YL Sbjct: 344 YL 345 >SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosaccharomyces pombe|chr 1|||Manual Length = 155 Score = 26.2 bits (55), Expect = 5.5 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = -2 Query: 468 KLRALLVVIPRILRSPPPTHPLIEDV 391 KLR++L I ++LR P P PL+ + Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130 >SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces pombe|chr 3|||Manual Length = 587 Score = 26.2 bits (55), Expect = 5.5 Identities = 30/96 (31%), Positives = 39/96 (40%), Gaps = 2/96 (2%) Frame = -1 Query: 733 AVSPLCIKPPSPAISXTSTRSSNPRFHTPTTPDLTSXSINPLTPY*KEFAPGLKPPLSSE 554 A SP PP A + TS SS +P + S P P AP +P Sbjct: 398 AASPQAGHPPPWAAASTSVSSSTS---SPAPWAKPASSAAPSNP-----APWQQPAAPQS 449 Query: 553 APSAYLTPSSLGMXKGVSPPYFQVNDES--QASRLI 452 AP+ + PSSL PP+ Q +S Q S L+ Sbjct: 450 APALSMNPSSL-------PPWQQPTQQSAVQPSNLV 478 >SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 868 Score = 25.8 bits (54), Expect = 7.2 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = -1 Query: 145 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 47 L++L +G SPC RL L +++P FW Sbjct: 21 LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50 >SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 308 Score = 25.4 bits (53), Expect = 9.6 Identities = 13/27 (48%), Positives = 14/27 (51%) Frame = -2 Query: 333 LVTHKELALKVSSIIGTRVYVFDPSCY 253 +V H E LKV II T Y D S Y Sbjct: 37 VVKHHEEFLKVCDIISTFTYQLDASIY 63 >SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces pombe|chr 1|||Manual Length = 390 Score = 25.4 bits (53), Expect = 9.6 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -3 Query: 473 ITSFAPY*SSFHAYSAPLLQLTPSSKTSS 387 + SF PY S F A P L ++PS+ +S Sbjct: 302 LQSFHPYESLFSAGQPPSLPISPSTSQNS 330 >SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity |Schizosaccharomyces pombe|chr 1|||Manual Length = 408 Score = 25.4 bits (53), Expect = 9.6 Identities = 10/28 (35%), Positives = 15/28 (53%) Frame = -3 Query: 722 LMHQATLPCDLGYINPIIKSPIPYTNHP 639 + HQA L C GY + + +P+ N P Sbjct: 348 ICHQAILRCIYGYYHNLSLEELPFINVP 375 >SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe|chr 1|||Manual Length = 488 Score = 25.4 bits (53), Expect = 9.6 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +1 Query: 118 IYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVV 219 ++Q A+ LG RS RC KSSF+ + DVV Sbjct: 33 LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,957,128 Number of Sequences: 5004 Number of extensions: 59263 Number of successful extensions: 254 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 188 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 254 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 392429240 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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