Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_H04
(808 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 32 0.56
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 32 0.56
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 32 0.56
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p... 31 1.3
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 30 2.2
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 29 3.0
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z70213-6|CAA94176.1| 167|Caenorhabditis elegans Hypothetical pr... 28 6.8
AF039718-5|AAP68905.1| 760|Caenorhabditis elegans Prion-like-(q... 28 6.8
AF039718-4|AAP68906.2| 696|Caenorhabditis elegans Prion-like-(q... 28 6.8
Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical p... 28 9.0
Z98877-15|CAB63407.3| 572|Caenorhabditis elegans Hypothetical p... 28 9.0
U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase ... 28 9.0
U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase ... 28 9.0
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical... 28 9.0
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical... 28 9.0
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 31.9 bits (69), Expect = 0.56
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -1
Query: 709 PPSPAISXTS-TRSSNPRFHTPTTPDL--TSXSINPLTPY*KEFAPGLKPPLSSEAPSAY 539
P SP+ S TS + S ++PT+P TS S +P +P +P P S +PS+
Sbjct: 1607 PVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSP 1666
Query: 538 LTPSSLGMXKGVSPPY 491
S SP Y
Sbjct: 1667 SYSPSSPRYSPTSPTY 1682
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 31.9 bits (69), Expect = 0.56
Identities = 19/71 (26%), Positives = 31/71 (43%)
Frame = -1
Query: 706 PSPAISXTSTRSSNPRFHTPTTPDLTSXSINPLTPY*KEFAPGLKPPLSSEAPSAYLTPS 527
P+P + T+T +NP TPTT TS N ++P+ + + AP +P+
Sbjct: 490 PTPVPTTTNTPPANPTTATPTTVG-TSKQTNTISPHLSTITGSIVTSTPTMAPQTSASPT 548
Query: 526 SLGMXKGVSPP 494
+ S P
Sbjct: 549 TTPTHTTASQP 559
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 31.9 bits (69), Expect = 0.56
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -1
Query: 709 PPSPAISXTS-TRSSNPRFHTPTTPDL--TSXSINPLTPY*KEFAPGLKPPLSSEAPSAY 539
P SP+ S TS + S ++PT+P TS S +P +P +P P S +PS+
Sbjct: 1614 PVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSP 1673
Query: 538 LTPSSLGMXKGVSPPY 491
S SP Y
Sbjct: 1674 SYSPSSPRYSPTSPTY 1689
>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
protein T20D3.11 protein.
Length = 1843
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 723 PYASSHPPLRSRXHQPDHQIPDS 655
P +S HPPL S H +H PD+
Sbjct: 66 PTSSHHPPLNSSSHHSNHNYPDT 88
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 29.9 bits (64), Expect = 2.2
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Frame = -1
Query: 709 PPSPAISXTSTRSSNPRFHTPTTPDLTSXSINPLTPY*KEFAP-GLKPPLSSEAPSAYLT 533
P S I+ TS+ S+ P + T T + + E ++ SS +PS + T
Sbjct: 695 PDSTIITSTSSTSTRPGTSSTATDSPTMDDTSKTSTVTSEGTTLSIESTESSASPSDFTT 754
Query: 532 PSSLGMXKGVSPPYFQVNDESQASRLISRHSTHT 431
P +G VS Q + S +S + T T
Sbjct: 755 PDFIGFTSSVSRTSEQYSSSSPSSDTTTMDVTST 788
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = -1
Query: 706 PSPAISXTSTRSSNPRFHTPTTPDLTSXSINPLTPY*KEFAPGLKPPLSSEAPSAYLTPS 527
P+P + T+T +NP TPTT S + P S+ AP+A + P+
Sbjct: 490 PTPVPTTTNTPPANPTTATPTTVGTIGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVNPT 549
Query: 526 S 524
S
Sbjct: 550 S 550
>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
F40H6.5 protein.
Length = 1288
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -1
Query: 730 VSPLCIKPP-SPAISXTSTRSSNPRFHTPTTPDLTSXSI 617
VS C++PP +P + ++T ++ P+ T +T TS +I
Sbjct: 1145 VSMACVRPPTTPTTTTSTTTTTTPKLTTTSTLPSTSTAI 1183
>Z70213-6|CAA94176.1| 167|Caenorhabditis elegans Hypothetical
protein ZK930.7 protein.
Length = 167
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 712 KPPSPAISXTSTRSSNPRFHTPTTPDLTSXSINPLT 605
KPP+P+ T N + P++P T S PLT
Sbjct: 101 KPPAPSARTPPTIYENLAINAPSSPSATDASSVPLT 136
>AF039718-5|AAP68905.1| 760|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform a protein.
Length = 760
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -1
Query: 727 SPLCIKPPSPAISXTSTRSS--NPRFHTPTTPDLTSXSINP 611
SP ++ P+ + S T ++S NP++H PT DL + P
Sbjct: 580 SPDAVETPTNSGSSTPPQTSVRNPKYHVPTPTDLPPPPVWP 620
>AF039718-4|AAP68906.2| 696|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform b protein.
Length = 696
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -1
Query: 727 SPLCIKPPSPAISXTSTRSS--NPRFHTPTTPDLTSXSINP 611
SP ++ P+ + S T ++S NP++H PT DL + P
Sbjct: 482 SPDAVETPTNSGSSTPPQTSVRNPKYHVPTPTDLPPPPVWP 522
>Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical
protein Y69H2.10b protein.
Length = 975
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1
Query: 724 PLCIKPPSPAISXTSTRSSNPRFHTPTTPDLTSXSINPLTP 602
PL PP+P +S + F P+ T ++NP+ P
Sbjct: 29 PLPTTPPAPTVSPYGNETLPTLFPPLVFPNFTVPTLNPMAP 69
>Z98877-15|CAB63407.3| 572|Caenorhabditis elegans Hypothetical
protein Y69H2.10a protein.
Length = 572
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1
Query: 724 PLCIKPPSPAISXTSTRSSNPRFHTPTTPDLTSXSINPLTP 602
PL PP+P +S + F P+ T ++NP+ P
Sbjct: 29 PLPTTPPAPTVSPYGNETLPTLFPPLVFPNFTVPTLNPMAP 69
>U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase
protein 25, isoformb protein.
Length = 1130
Score = 27.9 bits (59), Expect = 9.0
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Frame = -1
Query: 727 SPLCIKPPSPAISXTSTRSSNPRFHT----PTT-PDLTSXSINPLTPY*KEFAPGLKPPL 563
+P+ +P P ++ +SS P + PT P T+ P+T + P PP+
Sbjct: 857 NPVETRPSQPHVTMPPKKSSEPILSSEVLQPTRLPSATTSQAKPVTQPIRH--PS--PPV 912
Query: 562 SSEAPSAYLTPSSLGMXKGVSPPYFQVNDES 470
++ P+A + + +G + P F + + S
Sbjct: 913 ATVIPTAVVDKKPVSQNQGSNVPLFNITNSS 943
>U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase
protein 25, isoforma protein.
Length = 1237
Score = 27.9 bits (59), Expect = 9.0
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Frame = -1
Query: 727 SPLCIKPPSPAISXTSTRSSNPRFHT----PTT-PDLTSXSINPLTPY*KEFAPGLKPPL 563
+P+ +P P ++ +SS P + PT P T+ P+T + P PP+
Sbjct: 964 NPVETRPSQPHVTMPPKKSSEPILSSEVLQPTRLPSATTSQAKPVTQPIRH--PS--PPV 1019
Query: 562 SSEAPSAYLTPSSLGMXKGVSPPYFQVNDES 470
++ P+A + + +G + P F + + S
Sbjct: 1020 ATVIPTAVVDKKPVSQNQGSNVPLFNITNSS 1050
>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
protein Y57A10A.18b protein.
Length = 1459
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 568 PLSSEAPSAYLTPSSLGMXKGVSPP 494
P+++EAP+A PS + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227
>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
protein Y57A10A.18a protein.
Length = 1456
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 568 PLSSEAPSAYLTPSSLGMXKGVSPP 494
P+++EAP+A PS + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,413,875
Number of Sequences: 27780
Number of extensions: 336094
Number of successful extensions: 1219
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -