SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_H03
         (802 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               171   7e-43
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)                   36   0.038
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.82 
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)           31   1.4  
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)                  30   2.5  
SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)                 29   4.4  
SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)               29   4.4  
SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.4  
SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_52403| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)                   28   7.7  
SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)                 28   7.7  
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)                      28   7.7  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  171 bits (415), Expect = 7e-43
 Identities = 78/107 (72%), Positives = 87/107 (81%)
 Frame = -2

Query: 675 GTFHTRCFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIA 496
           G F    FTNQIQAAFREPRLLIV DP  DHQP+TEASYVNIPVIA CNTDSPLR VD+A
Sbjct: 101 GRFTPGTFTNQIQAAFREPRLLIVCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVA 160

Query: 495 IPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRXP 355
           IPCN K  HSIGLM+WLLAREVLR+RG + R   W+++ DL+FYR P
Sbjct: 161 IPCNNKGIHSIGLMFWLLAREVLRMRGSISRALPWEIMPDLYFYRDP 207



 Score = 64.9 bits (151), Expect = 7e-11
 Identities = 27/36 (75%), Positives = 32/36 (88%)
 Frame = -3

Query: 764 PADXXVXSSRPFGQRAVLKFXAHTGATPIAGRFTPG 657
           PAD  V S+RP+GQRA+LK+ +HTGATPIAGRFTPG
Sbjct: 71  PADVCVISARPYGQRAILKYASHTGATPIAGRFTPG 106


>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1772

 Score = 35.9 bits (79), Expect = 0.038
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +2

Query: 374  KSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDLVLHGIAMST-NLSGE---SVLHKA 541
            K+TT   RWS+G TP      ++   H   I    L+ HG   ST NL+ E    VL++ 
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNEN 1453

Query: 542  ITGMLTY 562
              G +TY
Sbjct: 1454 ELGTMTY 1460


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -1

Query: 637  SCIP*TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHCYP 491
            SCI   S+ DCI  C+ PS     F C+ +C         T++C +C+P
Sbjct: 875  SCIG-PSANDCI-TCSDPSNALIGFTCKANCTPGQFKNTATRVCENCHP 921


>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
          Length = 432

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = -2

Query: 603 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 508
           LDP  +HQPIT+ +   I ++A   TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147


>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
          Length = 315

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 471 HSIGLMWWLLAREVLRLRGVLP 406
           H  G +WW+L  E LR + VLP
Sbjct: 46  HDDGSVWWVLTSESLRAKAVLP 67


>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 195  SCFWSTPCSRRMVCPGTR*VEHNCRRTSRRHRSA 94
            +C W+ P   R+  PG R   H    T+R H +A
Sbjct: 904  TCSWALPAHYRVHVPGQRSASHEAFDTTRPHENA 937


>SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)
          Length = 397

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 622 TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHC 497
           TSSLD + PC+  S H+   +  + C C+  +++    C  C
Sbjct: 331 TSSLDTLAPCSF-SCHFACDVNTNQCICYYGYQMSDNKCKAC 371


>SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)
          Length = 418

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 369 RTNQPQHPSAGHGEA-HHEASTLHVPTTTTSNQ*SGKTWCC 488
           R  QP H ++ +  A HH A  LH P  +TS   +   W C
Sbjct: 176 RDGQPCHGASMNNFAYHHAADFLHYPPVSTSYMPAHPYWTC 216


>SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = +2

Query: 362 R*KNKSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDL---VLHGIAMSTNLSGESVL 532
           R  N+  T   ++   STP      + N+  ++P EW ++     H   +   L+GES  
Sbjct: 3   RGSNRRPTFKYKFGDSSTPFYSALKKQNDRSMRPWEWHEMKARYSHAQTLINALTGESKY 62

Query: 533 HKAITG 550
              +TG
Sbjct: 63  EFTLTG 68


>SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1601

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 413 TPRSLNTSRANNHHIKPIEWEDLVLHGIAMSTNLSGESVLH 535
           T +SLN S  N   + P EW + V+ G+     LSG ++L+
Sbjct: 864 TAQSLNVSVDNLKFLAPTEWRE-VIPGLKQEILLSGSNMLN 903


>SB_52403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -2

Query: 738 TALRSACCTEVXRAHRCYAYCGTFHTRCFTN 646
           + L  A CTE    HRC    G    RC T+
Sbjct: 18  SCLNGATCTETSYGHRCACVAGFSGNRCETD 48


>SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)
          Length = 428

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -2

Query: 627 REPR-LLIVLDPAQDHQPITEASYVNIPVIALC-NTDSPLRFVDIAIPCNTK 478
           RE R +++ +D A  H P  + +Y NI +I L  NT S  + +D  I  N K
Sbjct: 255 RENRNIMLFMDNAPCHTPSLKNTYCNIKIIFLSKNTTSKTQPLDSGIIANWK 306


>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
          Length = 1604

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 747  HXITALRSACCTEVXRAHRCYAYCGTF 667
            + + + R +  T++ R HRC  YC  F
Sbjct: 1549 YALVSPRESIATDIHRVHRCIGYCPQF 1575


>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
          Length = 487

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 364 VEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVGR-LGVAWDSNVHK 510
           V  Q+  + P  +T  HT+     T   P HQ + +GR  G   DSNV +
Sbjct: 242 VTNQMRGHEPRSITYNHTSITAPLTTGYPDHQGSYMGRYAGSVADSNVSR 291


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,760,722
Number of Sequences: 59808
Number of extensions: 467754
Number of successful extensions: 1132
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -