Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_H03
(802 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 148 4e-36
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 143 1e-34
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 127 7e-30
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP... 32 0.39
At5g23690.1 68418.m02777 polynucleotide adenylyltransferase fami... 31 1.2
At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin fa... 29 4.7
>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
to laminin receptor-like protein GB:U01955 [Arabidopsis
thaliana]; identical to cDNA laminin receptor homologue
GI:16379
Length = 298
Score = 148 bits (359), Expect = 4e-36
Identities = 66/110 (60%), Positives = 80/110 (72%)
Frame = -2
Query: 684 AYCGTFHTRCFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFV 505
A G FTNQ+Q +F EPRLLI+ DP DHQPI E + NIP+IA C+TDSP+RFV
Sbjct: 102 AIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFV 161
Query: 504 DIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRXP 355
DI IP N K HSIG ++WLLAR VL++RG + Q+WDV+VDLFFYR P
Sbjct: 162 DIGIPANNKGKHSIGCLFWLLARMVLQMRGTIAAGQKWDVMVDLFFYREP 211
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = -3
Query: 764 PADXXVXSSRPFGQRAVLKFXAHTGATPIAGRFTPG 657
P D V S+RP+GQRAVLKF +TGA IAGR TPG
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPG 110
>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 280
Score = 143 bits (346), Expect = 1e-34
Identities = 65/110 (59%), Positives = 78/110 (70%)
Frame = -2
Query: 684 AYCGTFHTRCFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFV 505
A G FTNQ+Q +F EPRLLI+ DP DHQPI E + NIP IA C+TDSP+ FV
Sbjct: 103 AIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFV 162
Query: 504 DIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRXP 355
DI IP N K HSIG ++WLLAR VL++RG + Q+WDV+VDLFFYR P
Sbjct: 163 DIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVDLFFYREP 212
Score = 51.6 bits (118), Expect = 6e-07
Identities = 23/36 (63%), Positives = 26/36 (72%)
Frame = -3
Query: 764 PADXXVXSSRPFGQRAVLKFXAHTGATPIAGRFTPG 657
P D V S+RP+GQRAVLKF +TG IAGR TPG
Sbjct: 76 PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPG 111
>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 332
Score = 127 bits (307), Expect = 7e-30
Identities = 58/103 (56%), Positives = 72/103 (69%)
Frame = -2
Query: 684 AYCGTFHTRCFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFV 505
A G FTNQ+Q +F EPRLLI+ DP DHQPI E + NIP IA C+TDSP+ FV
Sbjct: 103 AIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFV 162
Query: 504 DIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVD 376
DI IP N K HSIG ++WLLAR VL++RG + Q+WDV+V+
Sbjct: 163 DIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVN 205
Score = 51.6 bits (118), Expect = 6e-07
Identities = 23/36 (63%), Positives = 26/36 (72%)
Frame = -3
Query: 764 PADXXVXSSRPFGQRAVLKFXAHTGATPIAGRFTPG 657
P D V S+RP+GQRAVLKF +TG IAGR TPG
Sbjct: 76 PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPG 111
>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
identical to SP|Q9GCB9 Mitochondrial ribosomal protein
S2 {Arabidopsis thaliana}; contains Pfam profile
PF00318: ribosomal protein S2
Length = 219
Score = 32.3 bits (70), Expect = 0.39
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -2
Query: 621 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 472
P ++V D + I EAS + IPV+A+ + + PL F + I P + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181
>At5g23690.1 68418.m02777 polynucleotide adenylyltransferase family
protein low similarity to SP|P13685 Poly(A) polymerase
(EC 2.7.7.19) {Escherichia coli O157:H7}; contains Pfam
profile PF01743: polyA polymerase family protein
Length = 527
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = -1
Query: 340 RMNNKPRNRLWYQLNQK*LLLSMKTGMKHWSQWLHGLK 227
+++++PR+R W QLN K L LS K + L+GLK
Sbjct: 54 KVSDEPRDREWKQLNSKDLGLSSSMIAKSTRKVLNGLK 91
>At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin
family protein contains Pfam domain, PF01190: Pollen
proteins Ole e I family
Length = 146
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = -2
Query: 525 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 388
D L ++A+ C TKS + + ++ V + +P +RWD
Sbjct: 49 DHVLEGAEVAVLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWD 94
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,508,548
Number of Sequences: 28952
Number of extensions: 306629
Number of successful extensions: 780
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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