Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_H02
(790 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 184 3e-45
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 181 2e-44
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 155 1e-36
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 140 5e-32
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 130 3e-29
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 109 1e-22
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 95 2e-18
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 95 2e-18
UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S riboso... 85 2e-15
UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep: ... 77 7e-13
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 66 1e-09
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 65 2e-09
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 62 2e-08
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 60 5e-08
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 59 1e-07
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 58 3e-07
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 58 3e-07
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 57 4e-07
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 56 8e-07
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 55 2e-06
UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 53 7e-06
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 51 4e-05
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 44 0.003
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 43 0.008
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 36 0.88
UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-... 36 1.5
UniRef50_Q8IKJ3 Cluster: Putative uncharacterized protein; n=1; ... 35 2.0
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 35 2.7
UniRef50_Q2BFU2 Cluster: RTX toxins and related Ca2+-binding pro... 35 2.7
UniRef50_Q4N0L9 Cluster: Putative uncharacterized protein; n=1; ... 35 2.7
UniRef50_A6TQV4 Cluster: Putative uncharacterized protein; n=1; ... 33 6.2
UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1; ... 33 6.2
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 184 bits (447), Expect = 3e-45
Identities = 78/105 (74%), Positives = 93/105 (88%)
Frame = -2
Query: 585 RSYPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGK 406
+ PRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE+NKKI+RIG+G H +DGK
Sbjct: 238 KKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHMEDGK 297
Query: 405 VIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 271
++KNNAST YD++ KSITP+GGFPHYGEVNNDFVM +G + GT K
Sbjct: 298 LVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKK 342
Score = 91.9 bits (218), Expect = 2e-17
Identities = 44/66 (66%), Positives = 49/66 (74%)
Frame = -3
Query: 296 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 117
KGC G KKR+ITLRKSL VH R A+E I LKFIDT+SKFGHGRFQT +K AFMG K
Sbjct: 334 KGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393
Query: 116 KDRIRE 99
K +E
Sbjct: 394 KHLEKE 399
Score = 62.5 bits (145), Expect = 1e-08
Identities = 29/54 (53%), Positives = 35/54 (64%)
Frame = -1
Query: 736 GTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLP 575
GT+ +KV WA+ LEK +PV SVF+Q E+ID I TSRWHTKKLP
Sbjct: 188 GTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLP 241
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 181 bits (441), Expect = 2e-44
Identities = 80/105 (76%), Positives = 93/105 (88%)
Frame = -2
Query: 585 RSYPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGK 406
+ PRKTH+GLRKVACIGAWHP+RV+F+VARAGQKGYHHRTE+NKKIY+IGQG KDGK
Sbjct: 238 KKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGK 297
Query: 405 VIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 271
+IKNNAST+YDLS+KSI P+GGF HYGEV NDFVM +G + GT K
Sbjct: 298 LIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKK 342
Score = 106 bits (255), Expect = 5e-22
Identities = 50/67 (74%), Positives = 57/67 (85%)
Frame = -3
Query: 296 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 117
KGC +G KKR++TLRKSL V TKR ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LK
Sbjct: 334 KGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393
Query: 116 KDRIREE 96
KDRI +E
Sbjct: 394 KDRIAKE 400
Score = 66.5 bits (155), Expect = 7e-10
Identities = 30/54 (55%), Positives = 36/54 (66%)
Frame = -1
Query: 736 GTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLP 575
GT+ +K+ WARE LE+ +PV+ VF QDEMID I TSRWHTKKLP
Sbjct: 188 GTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLP 241
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 155 bits (376), Expect = 1e-36
Identities = 69/102 (67%), Positives = 84/102 (82%)
Frame = -2
Query: 585 RSYPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGK 406
+ PRKTHKGLRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG+ ++G
Sbjct: 190 KKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEG- 248
Query: 405 VIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 280
KNN STE+DL++K+ITPMGGFP YG VN D++M +G + G
Sbjct: 249 --KNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLG 288
Score = 96.3 bits (229), Expect = 8e-19
Identities = 46/66 (69%), Positives = 53/66 (80%)
Frame = -3
Query: 296 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 117
+G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A+K AFMG LK
Sbjct: 283 RGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 342
Query: 116 KDRIRE 99
+D + E
Sbjct: 343 RDFLAE 348
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 140 bits (338), Expect = 5e-32
Identities = 63/99 (63%), Positives = 77/99 (77%)
Frame = -2
Query: 576 PRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 397
PRKTH+GLRKVACIGAWHPSRV +TVARAGQ GYHHRT +NKKIY++G+ + +
Sbjct: 295 PRKTHRGLRKVACIGAWHPSRVMYTVARAGQHGYHHRTHLNKKIYQLGRAVSME-----P 349
Query: 396 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 280
N A+T YDL+ K+ITPMGGF YG V ND+VM +G + G
Sbjct: 350 NQATTAYDLTAKTITPMGGFVGYGTVRNDYVMLKGSVAG 388
Score = 86.6 bits (205), Expect = 6e-16
Identities = 40/67 (59%), Positives = 48/67 (71%)
Frame = -3
Query: 296 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 117
KG GP++R+ITLR+ + T R EKI LKFIDTSSK GHGRFQT +K+ + G LK
Sbjct: 383 KGSVAGPRRRVITLRRPMAPQTSRKLTEKITLKFIDTSSKIGHGRFQTKKEKSQWYGPLK 442
Query: 116 KDRIREE 96
KDRIR E
Sbjct: 443 KDRIRRE 449
Score = 36.7 bits (81), Expect = 0.66
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = -1
Query: 736 GTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLP 575
GTI K++ A+ LEK + +DSVF Q E D RW LP
Sbjct: 242 GTIAQKIELAKSLLEKEVRIDSVFQQSEACDVCAVTKGHGFTGVVKRWGVACLP 295
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 130 bits (315), Expect = 3e-29
Identities = 61/102 (59%), Positives = 77/102 (75%)
Frame = -2
Query: 597 VGTQRSYPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 418
V QR+ P + +G K+ C+GAWHP+RV+F+VA+ GQKGYHH + NKKI +IGQG
Sbjct: 214 VDIQRNCPERPIEGCPKL-CVGAWHPARVTFSVAQVGQKGYHHNGD-NKKICKIGQGYLI 271
Query: 417 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQG 292
KDGK+IKNNA TEY LS+KSI +GGF HYGEV NDF+ +G
Sbjct: 272 KDGKLIKNNAPTEYHLSDKSINLLGGFVHYGEVTNDFIRLKG 313
Score = 58.4 bits (135), Expect = 2e-07
Identities = 33/67 (49%), Positives = 42/67 (62%)
Frame = -3
Query: 296 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 117
KGC + KK + T+ K L V T + AL+KI+ K DT+ K GHG FQT K AF+G LK
Sbjct: 312 KGCAVRTKKHL-TICKYLLVQTIQWALKKIDPKLNDTTYKVGHGCFQTTEGKRAFIGPLK 370
Query: 116 KDRIREE 96
K+ EE
Sbjct: 371 KECTAEE 377
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 109 bits (261), Expect = 1e-22
Identities = 53/102 (51%), Positives = 72/102 (70%)
Frame = -2
Query: 576 PRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 397
PRKTH+GLRKVACIG W PSRV++T++RAGQKGYH RT NKKIY+IG +++
Sbjct: 223 PRKTHRGLRKVACIGPWTPSRVAWTISRAGQKGYHKRTLFNKKIYKIGS---EENFSYYS 279
Query: 396 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 271
N+ S D KS+ MGGF +G +NND+++ +G + G+ K
Sbjct: 280 NSLS---DSIVKSVNCMGGFKKFGFINNDYLIIKGSMTGSSK 318
Score = 55.2 bits (127), Expect = 2e-06
Identities = 27/56 (48%), Positives = 36/56 (64%)
Frame = -3
Query: 296 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFM 129
KG G KR I LRK+++ EKI LK++DTSSK GHGR+++ ADK + M
Sbjct: 310 KGSMTGSSKRPILLRKNIKNKISSVITEKIILKYVDTSSKRGHGRYESSADKFSKM 365
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 95.1 bits (226), Expect = 2e-18
Identities = 50/100 (50%), Positives = 65/100 (65%)
Frame = -2
Query: 570 KTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 391
K KG RKV IG WHP+RV +TV AGQ G+HHRTE+NK++ IG+ +GK +K +
Sbjct: 245 KDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE-----NGK-LKLD 298
Query: 390 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 271
+TE + ITP GGFPHYG V +DF+M G + G K
Sbjct: 299 ENTEIE-----ITPKGGFPHYGIVRSDFMMIAGSVPGAIK 333
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 94.7 bits (225), Expect = 2e-18
Identities = 55/105 (52%), Positives = 68/105 (64%)
Frame = -2
Query: 585 RSYPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGK 406
+ P KTH+ + ACI W +VA A QKG HH T +NKKIY+IGQG K+GK
Sbjct: 193 KKVPWKTHQEFHEAACI--WD----GLSVAWARQKGCHHCT-INKKIYKIGQGYLIKNGK 245
Query: 405 VIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 271
+IKNNAST+Y KSI+P+GG H G+V NDFVM + L GT K
Sbjct: 246 IIKNNASTDY---TKSISPLGGCIHCGKVTNDFVMLKDCLVGTKK 287
Score = 81.0 bits (191), Expect = 3e-14
Identities = 36/62 (58%), Positives = 46/62 (74%)
Frame = -3
Query: 296 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 117
K C +G KKR+++L KSL + TK+ L+K+N KFIDT+SKFGHG FQ +K FMG LK
Sbjct: 279 KDCLVGTKKRVLSLCKSLLMRTKQQTLQKVNFKFIDTTSKFGHGCFQIVGEKKGFMGPLK 338
Query: 116 KD 111
KD
Sbjct: 339 KD 340
>UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S ribosomal
protein L3 (L4); n=1; Macaca mulatta|Rep: PREDICTED:
similar to 60S ribosomal protein L3 (L4) - Macaca
mulatta
Length = 153
Score = 85.0 bits (201), Expect = 2e-15
Identities = 41/63 (65%), Positives = 50/63 (79%)
Frame = -3
Query: 284 MGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRI 105
+G KK+++TL KS V TK ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LKKD+
Sbjct: 88 VGTKKQVLTLCKSSLVQTKWRALEKIDLKFIDTTSKFGHGRFQTIGEKKAFMGPLKKDQT 147
Query: 104 REE 96
+E
Sbjct: 148 AKE 150
>UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep:
Ribosomal protein L3 - Mus musculus (Mouse)
Length = 67
Score = 76.6 bits (180), Expect = 7e-13
Identities = 33/47 (70%), Positives = 40/47 (85%)
Frame = -2
Query: 411 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 271
GK+IKNNAST+YDLS+KSI P+GGF HYGEV NDF+M +G + GT K
Sbjct: 1 GKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKK 47
Score = 46.8 bits (106), Expect = 6e-04
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = -3
Query: 296 KGCCMGPKKRIITLRKSLRVHTKRAALEK 210
KGC +G KKR++TLRKSL V TKR ALEK
Sbjct: 39 KGCVVGTKKRVLTLRKSLLVQTKRRALEK 67
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 65.7 bits (153), Expect = 1e-09
Identities = 39/106 (36%), Positives = 57/106 (53%)
Frame = -2
Query: 597 VGTQRSYPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 418
+ TQ+ +T K R V +G W+P R+ + V + GQ GYH RTE NK+I ++G
Sbjct: 219 IATQKRKHARTGKK-RHVGNLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRILKMG----- 272
Query: 417 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 280
D +E+ ITP GGF HYG + ND++M +G + G
Sbjct: 273 --------------DKAEE-ITPAGGFLHYGLIRNDYIMLKGSIPG 303
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 64.9 bits (151), Expect = 2e-09
Identities = 39/106 (36%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Frame = -2
Query: 594 GTQRSYPRKTHKGL-RKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 418
G + + + KG+ R V IG W P V ++V GQ GYH RTE NK+I +IG
Sbjct: 215 GVKIQFGKHARKGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIG----- 269
Query: 417 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 280
NN ITP GGF HYG + N++V+ +G + G
Sbjct: 270 -------NNGD--------EITPKGGFLHYGVIRNNYVVLKGSVQG 300
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 61.7 bits (143), Expect = 2e-08
Identities = 39/98 (39%), Positives = 52/98 (53%)
Frame = -2
Query: 573 RKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKN 394
++ KG R + IG PSRV +TV AGQ GYH RTE NK+I +IG+ DG
Sbjct: 230 QRKQKG-RHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIGE-----DG----- 278
Query: 393 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 280
+ +TP GGF +YG V D++M G + G
Sbjct: 279 ----------EEVTPRGGFVNYGVVRGDYIMIHGTVPG 306
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 60.5 bits (140), Expect = 5e-08
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Frame = -2
Query: 594 GTQRSYPRKTHKGLRK-VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 418
G Q+ + +G R+ + +G W+PSRV TV + GQ GYH RTE+NK++ I G
Sbjct: 217 GVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDG--- 273
Query: 417 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 280
TP GGFP+YGEV+ + + +G + G
Sbjct: 274 ------------------DEPTPDGGFPNYGEVDGPYTLVKGSVPG 301
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 59.3 bits (137), Expect = 1e-07
Identities = 39/97 (40%), Positives = 49/97 (50%)
Frame = -2
Query: 570 KTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 391
K K R++ +G + V T+ +AGQ GYH RTE NK+I RI
Sbjct: 227 KNSKRRRQIGNMGDFGTGYVRKTIRQAGQTGYHQRTEYNKRILRI--------------- 271
Query: 390 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 280
A E E ITP GGF HYGEV N +++ QG L G
Sbjct: 272 AGEE----ESQITPAGGFLHYGEVKNHYMIIQGSLPG 304
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 58.0 bits (134), Expect = 3e-07
Identities = 35/97 (36%), Positives = 49/97 (50%)
Frame = -2
Query: 570 KTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 391
K K R++ +G + V T+ +AGQ GYH RTE+NK+I RI
Sbjct: 247 KNSKRRRQIGNMGDFGTGYVRKTIRQAGQMGYHKRTELNKRILRIS-------------- 292
Query: 390 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 280
+ E +TP GGF HYGEV N +++ +G L G
Sbjct: 293 -----NPGESDVTPAGGFLHYGEVTNPYMVLEGSLPG 324
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 58.0 bits (134), Expect = 3e-07
Identities = 34/107 (31%), Positives = 55/107 (51%)
Frame = -2
Query: 597 VGTQRSYPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 418
+G +R K+ K +R++ +G P V +TV RAGQ G+H R E NK+I +G
Sbjct: 213 MGAKRKQ-HKSRKTVRELGSLGPISPQNVMYTVPRAGQMGFHQRIEYNKRIMAVGSA--- 268
Query: 417 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT 277
G+ + +I P GG+ H+G V D+++ +G + GT
Sbjct: 269 --GE-------------DDAINPSGGYKHFGMVKGDYIVLKGSVPGT 300
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 57.2 bits (132), Expect = 4e-07
Identities = 36/99 (36%), Positives = 47/99 (47%)
Frame = -2
Query: 576 PRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 397
PRK K R + +G WHP V TV +AGQ GY RT N ++ + +G
Sbjct: 216 PRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVRVLKYSKG---------- 265
Query: 396 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 280
+A T I GGF HYG V ND+V+ G + G
Sbjct: 266 EDADT--------INVRGGFLHYGLVKNDYVLLFGSVPG 296
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 56.4 bits (130), Expect = 8e-07
Identities = 27/56 (48%), Positives = 36/56 (64%)
Frame = -2
Query: 570 KTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKV 403
K+ KG+RKV IG+ P R+ TV GQ GYH RTE NK I +IG+ ++ + G V
Sbjct: 215 KSEKGVRKVGAIGSRGPGRIFPTVPMPGQMGYHRRTEYNKLIIKIGEPLNVEGGWV 270
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 54.8 bits (126), Expect = 2e-06
Identities = 34/97 (35%), Positives = 51/97 (52%)
Frame = -2
Query: 570 KTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 391
K+ K +R+V +G P V +TV RAGQ G+H R E +K+I +G
Sbjct: 223 KSRKTVREVGSLGPISPQSVMYTVPRAGQFGFHQRVEYDKRIMIMG-------------- 268
Query: 390 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 280
+T+ D + I P GGF H+G V DF++ +G + G
Sbjct: 269 -NTDDD--KLKINPDGGFKHFGLVKGDFIVLKGSVPG 302
>UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 173
Score = 53.2 bits (122), Expect = 7e-06
Identities = 23/51 (45%), Positives = 35/51 (68%)
Frame = +2
Query: 584 LCVPTRSDTFVSFALGDTNAVNHFILGKHRIDRDRFLQMFSGPFHFVLDGT 736
L P+ DT + GD+N +NHFIL ++R++R+ F ++F GP +FV DGT
Sbjct: 39 LGTPSVGDTLETVTFGDSNDINHFILFENRVNRNFFFKVFFGPVNFVGDGT 89
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 50.8 bits (116), Expect = 4e-05
Identities = 33/100 (33%), Positives = 49/100 (49%)
Frame = -2
Query: 570 KTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 391
K KG ++ +G P+ + F GQ G+H RTE NK+I ++G D +
Sbjct: 222 KHRKGHSRIGSVGPQKPA-IMFYTPFPGQLGFHQRTEYNKRILKVG------DAE----- 269
Query: 390 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 271
S K I P GG+PHYG V + F++ +G + G K
Sbjct: 270 -------SLKEINPPGGWPHYGLVRSQFIIVEGSVPGAVK 302
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 44.4 bits (100), Expect = 0.003
Identities = 37/101 (36%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Frame = -2
Query: 570 KTHKGLRKVACIGAWHPSRVSF-TVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKN 394
K KG R+ IGA R +F +AGQ G+H RTE NK+I I +K
Sbjct: 231 KHRKGSRR---IGARSHGRSTFWETPQAGQTGFHRRTEYNKRILMIDDDGYK-------- 279
Query: 393 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 271
+TP GGF YG V + FVM G + GT K
Sbjct: 280 ------------VTPAGGFLRYGVVRSTFVMLSGSIPGTPK 308
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 43.2 bits (97), Expect = 0.008
Identities = 34/100 (34%), Positives = 45/100 (45%)
Frame = -2
Query: 570 KTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 391
K KG RK+ G S+T + GQ G+H RTE NK+I +IG
Sbjct: 243 KHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD------------- 287
Query: 390 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 271
K I P GGF YG V N +V+ +G + G+ K
Sbjct: 288 -------EPKEINPAGGFVRYGIVRNTYVLLEGSILGSKK 320
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 36.3 bits (80), Expect = 0.88
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Frame = -2
Query: 570 KTHKGLRKVACIGAWHPSRVSFT-VARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKN 394
K KG RK IG+ P + + + GQ G+H RTE NK+I +IG
Sbjct: 285 KHRKGSRK---IGSRSPGFGTMSETPQPGQMGFHRRTEYNKRIIKIG------------- 328
Query: 393 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 280
++ +TP GGF YG V ++M G + G
Sbjct: 329 -------INGWEVTPKGGFLGYGIVYGPYIMLHGSIIG 359
>UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-12
- Homo sapiens (Human)
Length = 103
Score = 35.5 bits (78), Expect = 1.5
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = -1
Query: 244 CVCIQRGLH*KRSTSNSLTPRPSSVMVDSRRRLTRLHSWVH 122
C C + G +R T +SLTP PS M SR R HSW H
Sbjct: 63 CWCRRSGGLWRRLTLSSLTPPPSLAMAASRPWRRRKHSWDH 103
>UniRef50_Q8IKJ3 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 93
Score = 35.1 bits (77), Expect = 2.0
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 3 FFFFFFALSNVYFHGLHLRLRSSRWGCGSRSFFA 104
FFFFFF + N YF+ L L ++ GCG FA
Sbjct: 19 FFFFFFVVYNDYFNEPELPLDENKKGCGQFKCFA 52
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 34.7 bits (76), Expect = 2.7
Identities = 29/97 (29%), Positives = 42/97 (43%)
Frame = -2
Query: 570 KTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNN 391
K KG R+V +W S+ V + GQ GYH RT+ NK++ I K
Sbjct: 248 KHRKGSRRVGA-RSWGKGTSSY-VPQPGQMGYHRRTDYNKRVLMISDDPSK--------- 296
Query: 390 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 280
I GG+ HYG V + +V+ +G + G
Sbjct: 297 -----------INVEGGWLHYGLVKSKYVVLKGSVFG 322
>UniRef50_Q2BFU2 Cluster: RTX toxins and related Ca2+-binding
protein; n=2; Bacillus sp. NRRL B-14911|Rep: RTX toxins
and related Ca2+-binding protein - Bacillus sp. NRRL
B-14911
Length = 1415
Score = 34.7 bits (76), Expect = 2.7
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -2
Query: 411 GKVIKNNASTEYD-LSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 280
G VI+ N D LS K++T MG EV NDF M ++HG
Sbjct: 299 GAVIEGNVKVSGDFLSLKNLTIMGDLEIAKEVENDFYMEDAIVHG 343
>UniRef50_Q4N0L9 Cluster: Putative uncharacterized protein; n=1;
Theileria parva|Rep: Putative uncharacterized protein -
Theileria parva
Length = 989
Score = 34.7 bits (76), Expect = 2.7
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = +1
Query: 421 VDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNAGNFPKTLVCLTGVASLCAN 597
VDS+ +T+D + S+VM +T T+YS R + S+N + P T+ C + CAN
Sbjct: 696 VDSVGSTVDSVGEESSVMDDNMTVTTYSSR-AHSIQSNNTTDSPNTMECAN--TTECAN 751
>UniRef50_A6TQV4 Cluster: Putative uncharacterized protein; n=1;
Alkaliphilus metalliredigens QYMF|Rep: Putative
uncharacterized protein - Alkaliphilus metalliredigens
QYMF
Length = 143
Score = 33.5 bits (73), Expect = 6.2
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -2
Query: 603 LLVGTQRSYPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYH 472
LL Q+ +PR+T++ LRK G H +R S ++ + YH
Sbjct: 19 LLQKAQKEFPRETYRFLRKAGSKGRTHVARKSRSIVKKKSGNYH 62
>UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 1482
Score = 33.5 bits (73), Expect = 6.2
Identities = 19/67 (28%), Positives = 35/67 (52%)
Frame = +1
Query: 295 LXHHKVVVYFTIMGETSHRCNGFLRQIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVM 474
L H ++ YF + +SH +II + +++NNFA +F+ L D V+F+ +
Sbjct: 463 LFFHSLIQYFVYLNNSSHILINHKDKIIFIKHLLYNNFAQMFLKYL---CDNYVYFTPIN 519
Query: 475 ITFLTST 495
I + S+
Sbjct: 520 ILSIYSS 526
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 805,288,145
Number of Sequences: 1657284
Number of extensions: 16780149
Number of successful extensions: 40425
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 39052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40402
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67085240885
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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