Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_H02
(790 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0) 160 1e-39
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34) 108 6e-24
SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 1e-20
SB_13763| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.35
SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002) 29 3.2
SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08) 28 7.5
SB_5912| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-08) 28 9.9
>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
Length = 338
Score = 160 bits (389), Expect = 1e-39
Identities = 72/83 (86%), Positives = 80/83 (96%)
Frame = -2
Query: 594 GTQRSYPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 415
GT++ PRKTHKGLRKVACIGAWHP+RVSF+VARAGQ GYHHRTE+NKKIYRIGQGIHKK
Sbjct: 236 GTKK-LPRKTHKGLRKVACIGAWHPARVSFSVARAGQAGYHHRTELNKKIYRIGQGIHKK 294
Query: 414 DGKVIKNNASTEYDLSEKSITPM 346
DGKVIKNNASTEYDL++KSI+PM
Sbjct: 295 DGKVIKNNASTEYDLTDKSISPM 317
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/52 (50%), Positives = 29/52 (55%)
Frame = -1
Query: 730 IEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLP 575
+ +KV W RE LE P PV VF+ DEMID I T RW TKKLP
Sbjct: 190 VAEKVDWCRERLENPAPVRKVFSPDEMIDVIGVTKGHGFKGVTYRWGTKKLP 241
>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
Length = 347
Score = 108 bits (259), Expect = 6e-24
Identities = 50/66 (75%), Positives = 55/66 (83%)
Frame = -3
Query: 296 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 117
KGC +GPKKR++TLRKSL VHT R A EKI LKFIDTSSKFGHGRFQ PA+K AFMG LK
Sbjct: 231 KGCVVGPKKRVLTLRKSLLVHTSRDAAEKITLKFIDTSSKFGHGRFQHPAEKRAFMGMLK 290
Query: 116 KDRIRE 99
DR +E
Sbjct: 291 SDREKE 296
Score = 38.3 bits (85), Expect = 0.007
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = -2
Query: 345 GGFPHYGEVNNDFVMXQGLLHG 280
GGFPHYG+VN DF+M +G + G
Sbjct: 215 GGFPHYGQVNEDFLMVKGCVVG 236
>SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 58
Score = 97.1 bits (231), Expect = 1e-20
Identities = 42/45 (93%), Positives = 45/45 (100%)
Frame = -2
Query: 480 GYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPM 346
GYHHRTE+NKKIYRIGQGIHKKDGKVIKNNASTEYDL++KSITPM
Sbjct: 2 GYHHRTELNKKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSITPM 46
>SB_13763| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 319
Score = 32.7 bits (71), Expect = 0.35
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +1
Query: 463 STVMITFLTSTSYSERHPRRMPSSNAGNFPKTLVCLTGVASLCANEK*HLCILCPW 630
S I+F +T Y +RH RR S N +F + L G ++L N K CP+
Sbjct: 96 SRTPISFPNTTQYRDRHARRSRSQNGVSFLINIATLVGDSALGTNIKPAPYSSCPF 151
>SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)
Length = 458
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 30 NVYFHGLHLRLRSSRWGCGSRSFFANTILLE 122
N+Y HG+ L LR +GCGS +L++
Sbjct: 368 NIYSHGVRLFLRYLGYGCGSDGALPYCVLMD 398
>SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 561
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 328 IMGETSHRCNGFLRQIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLT 489
++GE FLR++ +S C++ N+ F + D L+ F++ + F T
Sbjct: 274 VLGENFQDLARFLRELQISPCLMVLNYPSFFSADIQKLNDALMFFTSRPLLFET 327
>SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -3
Query: 275 KKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMG 126
K R++ +K ++H+ + K ++F+ SKF H T A A G
Sbjct: 317 KDRLLEWKKERQIHSFSSTTLKARIRFVAAMSKFAHTTEDTTAWDEATKG 366
>SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)
Length = 545
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -2
Query: 162 IPDAG*QGCIHGYTQEGSYSRRSCGYHNPSGCCAALSVVREN 37
I D G CIH +T +G Y C + + G REN
Sbjct: 410 ISDDG-ANCIHVFTLDGQYVSNECSWESHEGYTHIAVTAREN 450
>SB_5912| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-08)
Length = 337
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +1
Query: 337 ETSHRCNGFLRQIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 501
ETS R FLRQ+ ++ C + FA++ + T + LV FS L+ SY
Sbjct: 9 ETSLRYVSFLRQVYIANCALNAIFAVIAI-----TGNLLVLFSIWKCRLLSEPSY 58
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,702,442
Number of Sequences: 59808
Number of extensions: 567377
Number of successful extensions: 1299
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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