Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_H02
         (790 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi...   145   3e-35
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi...   142   2e-34
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi...   142   2e-34
At3g60400.1 68416.m06755 mitochondrial transcription termination...    29   3.5  
At5g11390.1 68418.m01329 expressed protein                             29   4.6  
At1g77420.1 68414.m09016 hydrolase, alpha/beta fold family prote...    29   4.6  
At5g22400.1 68418.m02613 rac GTPase activating protein, putative...    28   8.1  

>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
           to ribosomal protein GI:806279 from [Arabidopsis
           thaliana]
          Length = 390

 Score =  145 bits (351), Expect = 3e-35
 Identities = 67/99 (67%), Positives = 79/99 (79%)
 Frame = -2

Query: 576 PRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 397
           PRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+YR+G     K G+   
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVG-----KVGQE-T 295

Query: 396 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 280
           ++A TEYD +EK ITPMGGFPHYG V  D++M +G   G
Sbjct: 296 HSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVG 334



 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 37/61 (60%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
 Frame = -3

Query: 296 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMG-TL 120
           KGCC+GPKKR++TLR++L   T R A+E+I LKFID +S  GHGRFQT  +KA F G T+
Sbjct: 329 KGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGRTI 388

Query: 119 K 117
           K
Sbjct: 389 K 389



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 21/54 (38%), Positives = 28/54 (51%)
 Frame = -1

Query: 736 GTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLP 575
           G I  KV +A    EK +PVD++F +DEMID I            +RW   +LP
Sbjct: 189 GDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 242


>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  142 bits (345), Expect = 2e-34
 Identities = 66/99 (66%), Positives = 78/99 (78%)
 Frame = -2

Query: 576 PRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 397
           PRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTE+NKKIYR+G     K G    
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLG-----KVG-TEA 295

Query: 396 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 280
           + A TEYD +EK +TPMGGFPHYG V +D++M +G   G
Sbjct: 296 HTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVG 334



 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 38/61 (62%), Positives = 46/61 (75%)
 Frame = -3

Query: 296 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 117
           KGCC+GPKKR++TLR+SL   T R ALE+I LKFIDT+S FGHGRFQT  +K  F   + 
Sbjct: 329 KGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVT 388

Query: 116 K 114
           K
Sbjct: 389 K 389



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 22/54 (40%), Positives = 29/54 (53%)
 Frame = -1

Query: 736 GTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLP 575
           GTI  KV +A    EK IP+++VF +DEMID I            +RW   +LP
Sbjct: 189 GTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 242


>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  142 bits (345), Expect = 2e-34
 Identities = 66/99 (66%), Positives = 78/99 (78%)
 Frame = -2

Query: 576 PRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 397
           PRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTE+NKKIYR+G     K G    
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLG-----KVG-TEA 295

Query: 396 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 280
           + A TEYD +EK +TPMGGFPHYG V +D++M +G   G
Sbjct: 296 HTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVG 334



 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 38/61 (62%), Positives = 46/61 (75%)
 Frame = -3

Query: 296 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 117
           KGCC+GPKKR++TLR+SL   T R ALE+I LKFIDT+S FGHGRFQT  +K  F   + 
Sbjct: 329 KGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVT 388

Query: 116 K 114
           K
Sbjct: 389 K 389



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 22/54 (40%), Positives = 29/54 (53%)
 Frame = -1

Query: 736 GTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLP 575
           GTI  KV +A    EK IP+++VF +DEMID I            +RW   +LP
Sbjct: 189 GTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 242


>At3g60400.1 68416.m06755 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 558

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -2

Query: 477 YHHRTEMNKKIYRIGQGIHKKDGK--VIKNNASTEYDLSEKSITPMGGFPHYG 325
           Y     MNK  Y    G+ K+D    +++N A   +DL +  I+  G   H+G
Sbjct: 262 YSEEALMNKAGYFCRFGVSKEDAALLILRNPAIMNFDLEKPVISVTGMLKHFG 314


>At5g11390.1 68418.m01329 expressed protein
          Length = 703

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 635 CHQGQRIQRCHFSLAHKEATPVRHTRVLGKLPALELGIL 519
           CHQG R+Q    SL + E         +G +  L++G L
Sbjct: 639 CHQGSRLQATFISLTNPEEEETGSKSDIGSVRRLDVGAL 677


>At1g77420.1 68414.m09016 hydrolase, alpha/beta fold family protein
           similar to monoglyceride lipase from [Homo sapiens]
           GI:14594904, [Mus musculus] GI:2632162; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 382

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +2

Query: 659 LGKHRIDRDRFLQMFSGPFHFVLDG 733
           L KH + +D+ L+++ G +H +L+G
Sbjct: 334 LHKHAVSQDKTLKLYPGGYHCILEG 358


>At5g22400.1 68418.m02613 rac GTPase activating protein, putative
           similar to rac GTPase activating protein 1 [Lotus
           japonicus] GI:3695059; contains Pfam profile PF00620:
           RhoGAP domain
          Length = 466

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -1

Query: 208 STSNSLTPRPSSVMVDSRRRLTRLHSWVHSRR 113
           S+S+S +P PSS+   SR   T L S  H+RR
Sbjct: 17  SSSSSSSPSPSSLSYASRSNATLLISSDHNRR 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,726,326
Number of Sequences: 28952
Number of extensions: 385109
Number of successful extensions: 987
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)