BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_T7_G20 (804 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_7946| Best HMM Match : DUF434 (HMM E-Value=7.5) 33 0.36 SB_51334| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.63 SB_31424| Best HMM Match : Sigma54_activat (HMM E-Value=6.2) 31 0.83 SB_19427| Best HMM Match : RVT_1 (HMM E-Value=7.5e-32) 31 0.83 SB_6446| Best HMM Match : DENN (HMM E-Value=2.2) 30 1.9 SB_4311| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9 SB_58983| Best HMM Match : Integrin_alpha (HMM E-Value=2.7) 29 3.3 SB_40344| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3 SB_36257| Best HMM Match : DEAD_2 (HMM E-Value=0.02) 29 5.8 >SB_7946| Best HMM Match : DUF434 (HMM E-Value=7.5) Length = 294 Score = 32.7 bits (71), Expect = 0.36 Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 4/134 (2%) Frame = -2 Query: 668 CPLEIR*HSTKLAYAPVMTYASVVFAHAARIHLKSFQIIQSRFCRIAVG----APWFVRN 501 CP I+ + K P + YAS + + H+K + +Q R R P V N Sbjct: 137 CPENIKEAAYKSLVLPHLEYASSAWDPWLKKHVKQIEKVQRRAGRFVTNCWDRTPGTVTN 196 Query: 500 VDLHDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADRMESSRRRPKHVI 321 + +DL+ +SK Q+A + F KA ++ L IPD D RR + + Sbjct: 197 I--LNDLEWPPLSKRRQNARLTLFYKAVNKKSAL------EIPDNID------RRTRQLR 242 Query: 320 SDPPDPLTVLLGTS 279 S PD L T+ Sbjct: 243 SSHPDKFIELCPTT 256 >SB_51334| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1402 Score = 31.9 bits (69), Expect = 0.63 Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 4/108 (3%) Frame = -2 Query: 668 CPLEIR*HSTKLAYAPVMTYASVVFAHAARIHLKSFQIIQSRFCRIAVG----APWFVRN 501 CP I+ + K P + YAS + + H+K + +Q R R P V N Sbjct: 808 CPANIKEAAYKSLVLPHLEYASSAWDPWLKKHVKQIEKVQRRSGRFVKNCWDRTPGTVTN 867 Query: 500 VDLHDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADR 357 + +DL+ +SK Q A + F KA ++ L IPD DR Sbjct: 868 I--LNDLEWPPLSKRRQDARLTLFYKAVNKKSAL------KIPDNIDR 907 >SB_31424| Best HMM Match : Sigma54_activat (HMM E-Value=6.2) Length = 263 Score = 31.5 bits (68), Expect = 0.83 Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 4/119 (3%) Frame = -2 Query: 668 CPLEIR*HSTKLAYAPVMTYASVVFAHAARIHLKSFQIIQSRFCRIAVG----APWFVRN 501 CP I+ + K P + YAS + + H+K + +Q R R P V N Sbjct: 130 CPENIKEAAYKSLVLPHLEYASSAWDPWLKKHVKQIEKVQRRAGRFVKNCWDRTPGTVTN 189 Query: 500 VDLHDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADRMESSRRRPKHV 324 + +DL+ +SK Q A + F KA ++ L IPD DR + + R H+ Sbjct: 190 I--LNDLEWPPLSKRRQDARLTLFYKAVNKKSAL------EIPDNIDR-RTRQLRSSHL 239 >SB_19427| Best HMM Match : RVT_1 (HMM E-Value=7.5e-32) Length = 698 Score = 31.5 bits (68), Expect = 0.83 Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 4/108 (3%) Frame = -2 Query: 668 CPLEIR*HSTKLAYAPVMTYASVVFAHAARIHLKSFQIIQSRFCRIAVG----APWFVRN 501 CP I+ + K P + YAS + + H+K + +Q R R P V N Sbjct: 543 CPANIKEAAYKSLVHPHLEYASSAWDPWLKKHVKQIEKVQRRAGRFVKNCWDRTPGTVTN 602 Query: 500 VDLHDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADR 357 + +DL+ +SK Q A + F KA ++ L IPD DR Sbjct: 603 I--LNDLEWPPLSKRRQDARLTLFYKAVNKKSAL------KIPDNIDR 642 >SB_6446| Best HMM Match : DENN (HMM E-Value=2.2) Length = 492 Score = 30.3 bits (65), Expect = 1.9 Identities = 22/74 (29%), Positives = 34/74 (45%) Frame = -2 Query: 713 HPRTSLPR*YVGEVKCPLEIR*HSTKLAYAPVMTYASVVFAHAARIHLKSFQIIQSRFCR 534 HP T + Y L H+T L +AP TYAS + R+H +F IQ+ +C Sbjct: 194 HPTTLMHAPYYTYACNLLHTCTHTTTLTHAPYFTYASTLL--LLRMHPTTF--IQASYC- 248 Query: 533 IAVGAPWFVRNVDL 492 + P++ + L Sbjct: 249 -IINEPYYTNHTTL 261 Score = 29.1 bits (62), Expect = 4.4 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = -2 Query: 719 RLHPRTSLPR*YVGEVKCPLEIR*HSTKLAYAPVMTYA 606 R HP T + Y + L +R H T L +AP TYA Sbjct: 126 RTHPTTLMHAPYYTYARNLLHLRTHPTTLMHAPYYTYA 163 Score = 29.1 bits (62), Expect = 4.4 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = -2 Query: 719 RLHPRTSLPR*YVGEVKCPLEIR*HSTKLAYAPVMTYA 606 R HP T + Y + L +R H T L +AP TYA Sbjct: 148 RTHPTTLMHAPYYTYARNLLHLRMHPTTLMHAPYYTYA 185 Score = 28.3 bits (60), Expect = 7.7 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = -2 Query: 713 HPRTSLPR*YVGEVKCPLEIR*HSTKLAYAPVMTYA 606 HP T + Y + L +R H T L +AP TYA Sbjct: 106 HPTTLMHAPYYTYARTLLHLRTHPTTLMHAPYYTYA 141 >SB_4311| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 143 Score = 30.3 bits (65), Expect = 1.9 Identities = 14/55 (25%), Positives = 27/55 (49%) Frame = -2 Query: 623 PVMTYASVVFAHAARIHLKSFQIIQSRFCRIAVGAPWFVRNVDLHDDLDLESISK 459 P+M Y V+ H + ++Q R RI W+ ++ L ++L++E +K Sbjct: 9 PLMDYCITVWGDNLIEHDNTILLLQKRAARIIAYKKWYDHSMALFEELNIEPFTK 63 >SB_58983| Best HMM Match : Integrin_alpha (HMM E-Value=2.7) Length = 237 Score = 29.5 bits (63), Expect = 3.3 Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 4/108 (3%) Frame = -2 Query: 668 CPLEIR*HSTKLAYAPVMTYASVVFAHAARIHLKSFQIIQSRFCRIAVG----APWFVRN 501 CP + + K P + YAS + + H+K + +Q R R P V N Sbjct: 110 CPETFKEAAYKTLVLPHLEYASSAWDPWLKKHVKQIEKVQRRAGRFVKNCWDRTPGTVTN 169 Query: 500 VDLHDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADR 357 + +DL+ +SK Q A + F KA ++ L IPD DR Sbjct: 170 I--LNDLEWPPLSKRRQDARLTLFYKAVNKKSAL------EIPDNIDR 209 >SB_40344| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 401 Score = 29.5 bits (63), Expect = 3.3 Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 4/108 (3%) Frame = -2 Query: 668 CPLEIR*HSTKLAYAPVMTYASVVFAHAARIHLKSFQIIQSRFCRIAVG----APWFVRN 501 CP I+ + K P + YAS + + H+K + +Q R P V N Sbjct: 246 CPANIKEAAYKSLVLPHLEYASSAWDPWLKKHVKQIEKVQRRAGSFVKNCWDRTPGTVTN 305 Query: 500 VDLHDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADR 357 + +DL+ +SK Q A + F KA ++ L IPD DR Sbjct: 306 I--LNDLEWPPLSKRRQDARLTLFYKAVNKKSAL------KIPDNIDR 345 >SB_36257| Best HMM Match : DEAD_2 (HMM E-Value=0.02) Length = 263 Score = 28.7 bits (61), Expect = 5.8 Identities = 16/56 (28%), Positives = 28/56 (50%) Frame = +3 Query: 477 VQVVMEVDVPDEPRGSDGYPAKTGLNNLKGF*VYAGRVSEHYTCIGHDGGVCKFCR 644 V V +E D + +G D + + + L+ KG VY+ +V +H+ + D C R Sbjct: 185 VHVQVEPDSKKKQKGLDIWTSGSKLSK-KGITVYSEQVQQHFRRVNFDALTCSLLR 239 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,795,061 Number of Sequences: 59808 Number of extensions: 458893 Number of successful extensions: 1312 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1195 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1312 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2227723674 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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