SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_G20
         (804 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7946| Best HMM Match : DUF434 (HMM E-Value=7.5)                     33   0.36 
SB_51334| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.63 
SB_31424| Best HMM Match : Sigma54_activat (HMM E-Value=6.2)           31   0.83 
SB_19427| Best HMM Match : RVT_1 (HMM E-Value=7.5e-32)                 31   0.83 
SB_6446| Best HMM Match : DENN (HMM E-Value=2.2)                       30   1.9  
SB_4311| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_58983| Best HMM Match : Integrin_alpha (HMM E-Value=2.7)            29   3.3  
SB_40344| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_36257| Best HMM Match : DEAD_2 (HMM E-Value=0.02)                   29   5.8  

>SB_7946| Best HMM Match : DUF434 (HMM E-Value=7.5)
          Length = 294

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 4/134 (2%)
 Frame = -2

Query: 668 CPLEIR*HSTKLAYAPVMTYASVVFAHAARIHLKSFQIIQSRFCRIAVG----APWFVRN 501
           CP  I+  + K    P + YAS  +    + H+K  + +Q R  R         P  V N
Sbjct: 137 CPENIKEAAYKSLVLPHLEYASSAWDPWLKKHVKQIEKVQRRAGRFVTNCWDRTPGTVTN 196

Query: 500 VDLHDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADRMESSRRRPKHVI 321
           +   +DL+   +SK  Q+A +  F KA   ++ L       IPD  D      RR + + 
Sbjct: 197 I--LNDLEWPPLSKRRQNARLTLFYKAVNKKSAL------EIPDNID------RRTRQLR 242

Query: 320 SDPPDPLTVLLGTS 279
           S  PD    L  T+
Sbjct: 243 SSHPDKFIELCPTT 256


>SB_51334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1402

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
 Frame = -2

Query: 668  CPLEIR*HSTKLAYAPVMTYASVVFAHAARIHLKSFQIIQSRFCRIAVG----APWFVRN 501
            CP  I+  + K    P + YAS  +    + H+K  + +Q R  R         P  V N
Sbjct: 808  CPANIKEAAYKSLVLPHLEYASSAWDPWLKKHVKQIEKVQRRSGRFVKNCWDRTPGTVTN 867

Query: 500  VDLHDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADR 357
            +   +DL+   +SK  Q A +  F KA   ++ L       IPD  DR
Sbjct: 868  I--LNDLEWPPLSKRRQDARLTLFYKAVNKKSAL------KIPDNIDR 907


>SB_31424| Best HMM Match : Sigma54_activat (HMM E-Value=6.2)
          Length = 263

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
 Frame = -2

Query: 668 CPLEIR*HSTKLAYAPVMTYASVVFAHAARIHLKSFQIIQSRFCRIAVG----APWFVRN 501
           CP  I+  + K    P + YAS  +    + H+K  + +Q R  R         P  V N
Sbjct: 130 CPENIKEAAYKSLVLPHLEYASSAWDPWLKKHVKQIEKVQRRAGRFVKNCWDRTPGTVTN 189

Query: 500 VDLHDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADRMESSRRRPKHV 324
           +   +DL+   +SK  Q A +  F KA   ++ L       IPD  DR  + + R  H+
Sbjct: 190 I--LNDLEWPPLSKRRQDARLTLFYKAVNKKSAL------EIPDNIDR-RTRQLRSSHL 239


>SB_19427| Best HMM Match : RVT_1 (HMM E-Value=7.5e-32)
          Length = 698

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
 Frame = -2

Query: 668 CPLEIR*HSTKLAYAPVMTYASVVFAHAARIHLKSFQIIQSRFCRIAVG----APWFVRN 501
           CP  I+  + K    P + YAS  +    + H+K  + +Q R  R         P  V N
Sbjct: 543 CPANIKEAAYKSLVHPHLEYASSAWDPWLKKHVKQIEKVQRRAGRFVKNCWDRTPGTVTN 602

Query: 500 VDLHDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADR 357
           +   +DL+   +SK  Q A +  F KA   ++ L       IPD  DR
Sbjct: 603 I--LNDLEWPPLSKRRQDARLTLFYKAVNKKSAL------KIPDNIDR 642


>SB_6446| Best HMM Match : DENN (HMM E-Value=2.2)
          Length = 492

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 22/74 (29%), Positives = 34/74 (45%)
 Frame = -2

Query: 713 HPRTSLPR*YVGEVKCPLEIR*HSTKLAYAPVMTYASVVFAHAARIHLKSFQIIQSRFCR 534
           HP T +   Y       L    H+T L +AP  TYAS +     R+H  +F  IQ+ +C 
Sbjct: 194 HPTTLMHAPYYTYACNLLHTCTHTTTLTHAPYFTYASTLL--LLRMHPTTF--IQASYC- 248

Query: 533 IAVGAPWFVRNVDL 492
             +  P++  +  L
Sbjct: 249 -IINEPYYTNHTTL 261



 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 719 RLHPRTSLPR*YVGEVKCPLEIR*HSTKLAYAPVMTYA 606
           R HP T +   Y    +  L +R H T L +AP  TYA
Sbjct: 126 RTHPTTLMHAPYYTYARNLLHLRTHPTTLMHAPYYTYA 163



 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 719 RLHPRTSLPR*YVGEVKCPLEIR*HSTKLAYAPVMTYA 606
           R HP T +   Y    +  L +R H T L +AP  TYA
Sbjct: 148 RTHPTTLMHAPYYTYARNLLHLRMHPTTLMHAPYYTYA 185



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 713 HPRTSLPR*YVGEVKCPLEIR*HSTKLAYAPVMTYA 606
           HP T +   Y    +  L +R H T L +AP  TYA
Sbjct: 106 HPTTLMHAPYYTYARTLLHLRTHPTTLMHAPYYTYA 141


>SB_4311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -2

Query: 623 PVMTYASVVFAHAARIHLKSFQIIQSRFCRIAVGAPWFVRNVDLHDDLDLESISK 459
           P+M Y   V+      H  +  ++Q R  RI     W+  ++ L ++L++E  +K
Sbjct: 9   PLMDYCITVWGDNLIEHDNTILLLQKRAARIIAYKKWYDHSMALFEELNIEPFTK 63


>SB_58983| Best HMM Match : Integrin_alpha (HMM E-Value=2.7)
          Length = 237

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 4/108 (3%)
 Frame = -2

Query: 668 CPLEIR*HSTKLAYAPVMTYASVVFAHAARIHLKSFQIIQSRFCRIAVG----APWFVRN 501
           CP   +  + K    P + YAS  +    + H+K  + +Q R  R         P  V N
Sbjct: 110 CPETFKEAAYKTLVLPHLEYASSAWDPWLKKHVKQIEKVQRRAGRFVKNCWDRTPGTVTN 169

Query: 500 VDLHDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADR 357
           +   +DL+   +SK  Q A +  F KA   ++ L       IPD  DR
Sbjct: 170 I--LNDLEWPPLSKRRQDARLTLFYKAVNKKSAL------EIPDNIDR 209


>SB_40344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 401

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 4/108 (3%)
 Frame = -2

Query: 668 CPLEIR*HSTKLAYAPVMTYASVVFAHAARIHLKSFQIIQSRFCRIAVG----APWFVRN 501
           CP  I+  + K    P + YAS  +    + H+K  + +Q R            P  V N
Sbjct: 246 CPANIKEAAYKSLVLPHLEYASSAWDPWLKKHVKQIEKVQRRAGSFVKNCWDRTPGTVTN 305

Query: 500 VDLHDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADR 357
           +   +DL+   +SK  Q A +  F KA   ++ L       IPD  DR
Sbjct: 306 I--LNDLEWPPLSKRRQDARLTLFYKAVNKKSAL------KIPDNIDR 345


>SB_36257| Best HMM Match : DEAD_2 (HMM E-Value=0.02)
          Length = 263

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 477 VQVVMEVDVPDEPRGSDGYPAKTGLNNLKGF*VYAGRVSEHYTCIGHDGGVCKFCR 644
           V V +E D   + +G D + + + L+  KG  VY+ +V +H+  +  D   C   R
Sbjct: 185 VHVQVEPDSKKKQKGLDIWTSGSKLSK-KGITVYSEQVQQHFRRVNFDALTCSLLR 239


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,795,061
Number of Sequences: 59808
Number of extensions: 458893
Number of successful extensions: 1312
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -