Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_G18
         (822 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9103| Best HMM Match : Herpes_UL31 (HMM E-Value=4)                  31   1.5  
SB_30944| Best HMM Match : FlaG (HMM E-Value=1.2)                      30   2.0  
SB_43692| Best HMM Match : GM_CSF (HMM E-Value=6.5)                    30   2.0  
SB_26953| Best HMM Match : GM_CSF (HMM E-Value=6.5)                    30   2.0  

>SB_9103| Best HMM Match : Herpes_UL31 (HMM E-Value=4)
          Length = 551

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 613 PERHLEHCHGGAXHLATGPGSCTALGTKSVTFPRXLTRTYC 735
           P+ HL HCHG A  LA     C    +K ++    +TR  C
Sbjct: 275 PQAHLTHCHGHALSLAV-HDMCKRSASKLLSETLDMTREIC 314


>SB_30944| Best HMM Match : FlaG (HMM E-Value=1.2)
          Length = 922

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = +1

Query: 613 PERHLEHCHGGAXHLATGPGSCTALGTKSVTFPRXLTRTYCIFLXVQSPK 762
           P+ HL HCHG A  LA     C    +K ++     TR  C  +   SPK
Sbjct: 591 PQAHLTHCHGHALSLAV-HDMCKRSASKLLSETLDTTREICKLIKF-SPK 638


>SB_43692| Best HMM Match : GM_CSF (HMM E-Value=6.5)
          Length = 208

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = +1

Query: 613 PERHLEHCHGGAXHLATGPGSCTALGTKSVTFPRXLTRTYCIFLXVQSPK 762
           P+ HL HCHG A  LA     C    +K ++     TR  C  +   SPK
Sbjct: 52  PQAHLTHCHGHALSLAV-HDMCKRSASKLLSETLDTTREICKLIKF-SPK 99


>SB_26953| Best HMM Match : GM_CSF (HMM E-Value=6.5)
          Length = 310

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = +1

Query: 613 PERHLEHCHGGAXHLATGPGSCTALGTKSVTFPRXLTRTYCIFLXVQSPK 762
           P+ HL HCHG A  LA     C    +K ++     TR  C  +   SPK
Sbjct: 130 PQAHLTHCHGHALSLAV-HDMCKRSASKLLSETLDTTREICKLIKF-SPK 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,793,590
Number of Sequences: 59808
Number of extensions: 221199
Number of successful extensions: 542
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)