BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_T7_G18 (822 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_9103| Best HMM Match : Herpes_UL31 (HMM E-Value=4) 31 1.5 SB_30944| Best HMM Match : FlaG (HMM E-Value=1.2) 30 2.0 SB_43692| Best HMM Match : GM_CSF (HMM E-Value=6.5) 30 2.0 SB_26953| Best HMM Match : GM_CSF (HMM E-Value=6.5) 30 2.0 >SB_9103| Best HMM Match : Herpes_UL31 (HMM E-Value=4) Length = 551 Score = 30.7 bits (66), Expect = 1.5 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = +1 Query: 613 PERHLEHCHGGAXHLATGPGSCTALGTKSVTFPRXLTRTYC 735 P+ HL HCHG A LA C +K ++ +TR C Sbjct: 275 PQAHLTHCHGHALSLAV-HDMCKRSASKLLSETLDMTREIC 314 >SB_30944| Best HMM Match : FlaG (HMM E-Value=1.2) Length = 922 Score = 30.3 bits (65), Expect = 2.0 Identities = 18/50 (36%), Positives = 23/50 (46%) Frame = +1 Query: 613 PERHLEHCHGGAXHLATGPGSCTALGTKSVTFPRXLTRTYCIFLXVQSPK 762 P+ HL HCHG A LA C +K ++ TR C + SPK Sbjct: 591 PQAHLTHCHGHALSLAV-HDMCKRSASKLLSETLDTTREICKLIKF-SPK 638 >SB_43692| Best HMM Match : GM_CSF (HMM E-Value=6.5) Length = 208 Score = 30.3 bits (65), Expect = 2.0 Identities = 18/50 (36%), Positives = 23/50 (46%) Frame = +1 Query: 613 PERHLEHCHGGAXHLATGPGSCTALGTKSVTFPRXLTRTYCIFLXVQSPK 762 P+ HL HCHG A LA C +K ++ TR C + SPK Sbjct: 52 PQAHLTHCHGHALSLAV-HDMCKRSASKLLSETLDTTREICKLIKF-SPK 99 >SB_26953| Best HMM Match : GM_CSF (HMM E-Value=6.5) Length = 310 Score = 30.3 bits (65), Expect = 2.0 Identities = 18/50 (36%), Positives = 23/50 (46%) Frame = +1 Query: 613 PERHLEHCHGGAXHLATGPGSCTALGTKSVTFPRXLTRTYCIFLXVQSPK 762 P+ HL HCHG A LA C +K ++ TR C + SPK Sbjct: 130 PQAHLTHCHGHALSLAV-HDMCKRSASKLLSETLDTTREICKLIKF-SPK 177 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,793,590 Number of Sequences: 59808 Number of extensions: 221199 Number of successful extensions: 542 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 464 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 542 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2299585728 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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