BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_T7_G16 (868 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 27 3.5 SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc... 26 6.0 SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 26 8.0 SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 26 8.0 >SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 517 Score = 27.1 bits (57), Expect = 3.5 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 4/35 (11%) Frame = -1 Query: 331 PPPP----LRSLISNLSNTCDLTPLPEWSCEQSAW 239 PPP +RS+ L D+TP+ +W ++S W Sbjct: 101 PPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135 >SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces pombe|chr 1|||Manual Length = 431 Score = 26.2 bits (55), Expect = 6.0 Identities = 8/15 (53%), Positives = 10/15 (66%) Frame = +2 Query: 614 SGKDIWEHCHXELXP 658 S +IW+HCH L P Sbjct: 205 SAAEIWKHCHYSLDP 219 >SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotransferase Eca39|Schizosaccharomyces pombe|chr 2|||Manual Length = 380 Score = 25.8 bits (54), Expect = 8.0 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = -1 Query: 328 PPPLRSLISNLSNTCDLTPLPEW 260 P P+ S ++N +L PLPEW Sbjct: 10 PKPMDSSHIKVTNVKELKPLPEW 32 >SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharomyces pombe|chr 1|||Manual Length = 147 Score = 25.8 bits (54), Expect = 8.0 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%) Frame = -3 Query: 650 VPXGNVPRCLSRR-RAPGHTRXRPGAVFXRGAPASALR 540 +P G P L+ R G+T P A F RGAP R Sbjct: 108 IPLGQAPVGLAGPVRGVGYTAPPPPAGFGRGAPPPGFR 145 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,881,431 Number of Sequences: 5004 Number of extensions: 23351 Number of successful extensions: 63 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 63 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 432473040 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -