Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_G16
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    27   3.5  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    26   6.0  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    26   8.0  
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    26   8.0  

>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = -1

Query: 331 PPPP----LRSLISNLSNTCDLTPLPEWSCEQSAW 239
           PPP     +RS+   L    D+TP+ +W  ++S W
Sbjct: 101 PPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 614 SGKDIWEHCHXELXP 658
           S  +IW+HCH  L P
Sbjct: 205 SAAEIWKHCHYSLDP 219


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 328 PPPLRSLISNLSNTCDLTPLPEW 260
           P P+ S    ++N  +L PLPEW
Sbjct: 10  PKPMDSSHIKVTNVKELKPLPEW 32


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -3

Query: 650 VPXGNVPRCLSRR-RAPGHTRXRPGAVFXRGAPASALR 540
           +P G  P  L+   R  G+T   P A F RGAP    R
Sbjct: 108 IPLGQAPVGLAGPVRGVGYTAPPPPAGFGRGAPPPGFR 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,881,431
Number of Sequences: 5004
Number of extensions: 23351
Number of successful extensions: 63
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)